View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13898_low_8 (Length: 482)
Name: NF13898_low_8
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13898_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 47 - 482
Target Start/End: Complemental strand, 27585503 - 27585058
Alignment:
| Q |
47 |
attcattgcagaatataatataaaattggaatgtttttcctttnnnnnnnttggaatatgatttggagaagccactaaattttcctaacaccaatctata |
146 |
Q |
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| T |
27585503 |
attcattgtagaatataatataaaattggaatgtttttccttttaaaaaattgaaatatgatttggagaagccactaaattttcctaacaccaatctata |
27585404 |
T |
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| Q |
147 |
tgatttggagaagtagaatgatataaggttcaattcaatttatatacaga--taacaaatgtgcacccatattttcttttcacaacctttgatttttgtg |
244 |
Q |
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| T |
27585403 |
tgacttggagaagtagaatgatataaggttcaattcaatttatatatagagataacaaatgtgcacccatattttcttttcacaacctttgatttttgtg |
27585304 |
T |
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| Q |
245 |
aatatggatacaaaaagaaaagtcatttgttttgttccaaaatataagnnnnnnntagttttgatcaattttaat-tgatatcatgctgttgaataagtc |
343 |
Q |
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| T |
27585303 |
aatatggatacaaaaagaaaagtcatttattttgttccaaaatataagaaaaaattagttgtgaccaattttaatatgatatcatgttgttgaataagcc |
27585204 |
T |
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| Q |
344 |
gtgtgatatcgtgtttt--------agatgtatttatactactggtatttggatgtatttaaatcactttatcacaacttttaaataatcggtcagattc |
435 |
Q |
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| T |
27585203 |
gtgtgatatcatgtgttaatatagcagcgggatttatactaccggta-ttagatgtatttaaatcactttatcacaacttttaaataatcagtcagattc |
27585105 |
T |
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| Q |
436 |
tctttgttataatatacacctgaatatctttttgtacatccatatgg |
482 |
Q |
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| T |
27585104 |
tctttgttataatatacacccgaatatctttttatacatccatatgg |
27585058 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 444
Target Start/End: Original strand, 18493969 - 18494024
Alignment:
| Q |
389 |
tgtatttaaatcactttatcacaacttttaaataatcggtcagattctctttgtta |
444 |
Q |
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| T |
18493969 |
tgtattgaaatcactttatcataacttttaaataatcggtcatgttccctttgtta |
18494024 |
T |
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