View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13898_low_9 (Length: 473)

Name: NF13898_low_9
Description: NF13898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13898_low_9
NF13898_low_9
[»] chr1 (20 HSPs)
chr1 (17-185)||(44380977-44381145)
chr1 (14-193)||(44381580-44381760)
chr1 (351-458)||(44381201-44381308)
chr1 (85-185)||(44382778-44382878)
chr1 (256-343)||(52331405-52331492)
chr1 (257-339)||(7709996-7710078)
chr1 (258-343)||(7709700-7709785)
chr1 (257-343)||(52331697-52331783)
chr1 (251-343)||(34492519-34492611)
chr1 (259-340)||(13618577-13618658)
chr1 (259-340)||(13618394-13618475)
chr1 (190-257)||(44381460-44381527)
chr1 (258-339)||(37646951-37647032)
chr1 (375-446)||(44380596-44380667)
chr1 (258-323)||(34492237-34492302)
chr1 (251-324)||(13618249-13618322)
chr1 (190-257)||(44380849-44380916)
chr1 (190-257)||(44382658-44382730)
chr1 (256-325)||(37646740-37646809)
chr1 (14-67)||(44380466-44380518)
[»] chr4 (14 HSPs)
chr4 (251-343)||(41315892-41315984)
chr4 (257-343)||(23254667-23254753)
chr4 (259-343)||(15874229-15874313)
chr4 (256-343)||(42305903-42305990)
chr4 (258-343)||(23254377-23254462)
chr4 (257-342)||(42306195-42306280)
chr4 (257-343)||(20878692-20878778)
chr4 (257-338)||(38484460-38484541)
chr4 (255-339)||(15874522-15874606)
chr4 (257-340)||(41316192-41316274)
chr4 (251-338)||(55893466-55893553)
chr4 (257-333)||(55893213-55893289)
chr4 (248-326)||(38485175-38485254)
chr4 (258-302)||(20878988-20879032)
[»] chr8 (5 HSPs)
chr8 (256-343)||(3068772-3068859)
chr8 (256-343)||(3069064-3069151)
chr8 (256-343)||(3305617-3305704)
chr8 (257-343)||(3305909-3305995)
chr8 (197-254)||(8274300-8274357)
[»] chr3 (13 HSPs)
chr3 (257-343)||(33794433-33794519)
chr3 (258-343)||(40560749-40560834)
chr3 (251-343)||(5048294-5048386)
chr3 (256-343)||(20124653-20124740)
chr3 (257-343)||(14783734-14783820)
chr3 (255-343)||(31724350-31724438)
chr3 (257-343)||(2439769-2439855)
chr3 (257-343)||(5048003-5048089)
chr3 (266-343)||(2440060-2440137)
chr3 (257-326)||(14784027-14784097)
chr3 (256-324)||(31724657-31724725)
chr3 (257-339)||(40560473-40560554)
chr3 (258-339)||(33794727-33794806)
[»] chr2 (6 HSPs)
chr2 (256-343)||(4731973-4732060)
chr2 (256-343)||(12414127-12414214)
chr2 (256-343)||(12426187-12426274)
chr2 (258-343)||(4731715-4731800)
chr2 (257-324)||(12413837-12413904)
chr2 (257-324)||(12425897-12425964)
[»] chr5 (6 HSPs)
chr5 (257-343)||(39760423-39760509)
chr5 (257-343)||(31155632-31155718)
chr5 (257-343)||(31156183-31156269)
chr5 (258-340)||(39761607-39761689)
chr5 (258-339)||(31155893-31155974)
chr5 (256-318)||(31155368-31155430)
[»] scaffold0032 (2 HSPs)
scaffold0032 (255-343)||(33206-33294)
scaffold0032 (297-343)||(32959-33005)
[»] chr7 (9 HSPs)
chr7 (256-340)||(37873415-37873499)
chr7 (258-343)||(24825850-24825935)
chr7 (251-343)||(24825552-24825644)
chr7 (256-340)||(32793076-32793160)
chr7 (258-343)||(32792783-32792868)
chr7 (256-335)||(11324346-11324425)
chr7 (257-340)||(37879143-37879226)
chr7 (261-325)||(9402563-9402627)
chr7 (261-324)||(11324056-11324119)
[»] scaffold0428 (2 HSPs)
scaffold0428 (259-343)||(7765-7849)
scaffold0428 (259-343)||(7491-7575)
[»] scaffold0184 (2 HSPs)
scaffold0184 (255-343)||(7015-7103)
scaffold0184 (258-343)||(7243-7328)
[»] scaffold0291 (2 HSPs)
scaffold0291 (256-339)||(10952-11035)
scaffold0291 (257-339)||(11349-11431)
[»] scaffold1408 (1 HSPs)
scaffold1408 (259-343)||(1745-1829)
[»] chr6 (14 HSPs)
chr6 (260-340)||(20582638-20582718)
chr6 (257-340)||(16368893-16368976)
chr6 (257-343)||(16766288-16766374)
chr6 (257-337)||(6851248-6851328)
chr6 (256-340)||(33746710-33746794)
chr6 (258-337)||(16766556-16766635)
chr6 (256-334)||(29846978-29847056)
chr6 (251-343)||(11242285-11242377)
chr6 (257-341)||(11246343-11246427)
chr6 (252-323)||(33746961-33747032)
chr6 (284-343)||(20582898-20582957)
chr6 (255-324)||(16368638-16368707)
chr6 (256-324)||(29846787-29846855)
chr6 (256-324)||(6851549-6851616)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 44381145 - 44380977
Alignment:
Q  17 tcttggtgaaggcggtgttcaatgtaatgatatcgatattatgagttggcaaattgacggcnnnnnnngtatttgcattattatttttgttaagtgtcaa 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||          |||||||||||||||||||||| |||||||||    
T  44381145 tcttggtgaaggcggtgttcaatgtaataatatcgatattatgagttggcaaattgactataaaataagtatttgcattattatttttgtgaagtgtcaa 44381046  T
Q  117 ctttttatcatcattcaatcactattgtaacatcataaatattttaaataaatactaaagaaattctaa 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44381045 ctttttatcatcattcaatcactattgtaacatcataaatattttaaataaatagtaaagaaattctaa 44380977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 44381760 - 44381580
Alignment:
Q  14 gaatcttggtgaaggcggtgttcaatgtaatgatatcgatattatgagttggcaaattgacggcnnnnnnngtatttgcattattattttt-gttaagtg 112  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||         ||||||||||||||||||| || |||||    
T  44381760 gaatcttggtgaaggcggtgttcaccgtaatgatatcaatattatgagttggcaaattgacggaaaaaaaaatatttgcattattattttttgtcaagtg 44381661  T
Q  113 tcaactttttatcatcattcaatcactattgtaacatcataaatattttaaataaatactaaagaaattctaagatgaaca 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  44381660 tcaactttttatcatcattcaatcactattgtaacatcataaatattttaaataaataataaagaaattctaatatgaaca 44381580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 351 - 458
Target Start/End: Complemental strand, 44381308 - 44381201
Alignment:
Q  351 ttctgataaatacaagtacacgatgatcacttatgaagacggtcttatgaaaaattcaccttaaatgttatttttactactcctatctacctagttgcat 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  44381308 ttctgataaatacaagtacacgatgatcacttatgaagacggtcttatgaaaaactcaccttaaatgttattgttactactcctatctacctagttgcat 44381209  T
Q  451 accatttt 458  Q
    ||||||||    
T  44381208 accatttt 44381201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 44382878 - 44382778
Alignment:
Q  85 gtatttgcattattatttttgttaagtgtcaactttttatcatcattcaatcactattgtaacatcataaatattttaaataaatactaaagaaattcta 184  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44382878 gtatttgcattattatttttgtcaagtgtcaactttttatcatcgttcaatcactattgtaacatcataaatattttaaataaatactagagaaattcta 44382779  T
Q  185 a 185  Q
    |    
T  44382778 a 44382778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 52331405 - 52331492
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52331405 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 52331492  T

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Target: chr1; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 7710078 - 7709996
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7710078 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagtcc 7709996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 7709700 - 7709785
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7709700 ggcttaaatattgaactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 7709785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 52331783 - 52331697
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  52331783 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttgatccttgtaaaataaaaatttagaaatcagtccccgc 52331697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 34492611 - 34492519
Alignment:
Q  251 aaaataaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||    
T  34492611 aaaaaaaggcttaaatattgcactcgttcctgcaaatatggtctgtttaagttttggtccttgtaaaataaaaattcagacatcagttcccgc 34492519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 13618658 - 13618577
Alignment:
Q  259 gcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 340  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  13618658 gcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaaatcagaaatcaatccc 13618577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 259 - 340
Target Start/End: Complemental strand, 13618475 - 13618394
Alignment:
Q  259 gcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 340  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  13618475 gcttaaatattgcattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaaatcagaaatcaatccc 13618394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 44381527 - 44381460
Alignment:
Q  190 aacaattacatatgtcattttttggtagtagatgttaatgatactttttatttttatgattaaaataa 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44381527 aacaattacatatgtcattttttggtagtagatgttaatgatactttttatttttatgatcaaaataa 44381460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 37647032 - 37646951
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 339  Q
    ||||||||||||||| ||||  ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  37647032 ggcttaaatattgcattcgtttctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcaaaaatcagtcc 37646951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 375 - 446
Target Start/End: Complemental strand, 44380667 - 44380596
Alignment:
Q  375 gatcacttatgaagacggtcttatgaaaaattcaccttaaatgttatttttactactcctatctacctagtt 446  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  44380667 gatcacttatgaagaaggttttatgaaaaactcaccttaaatgttattgttattactcctatctacctagtt 44380596  T

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Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 34492237 - 34492302
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaa 323  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||    
T  34492237 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtccgtgtaaaaaaaaa 34492302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 13618249 - 13618322
Alignment:
Q  251 aaaataaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaa 324  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||||||||| |||| ||||||| |||||    
T  13618249 aaaaaaaggcttaaatattgcactcttccctgcaaatatgacccgtttaagttttagtccctgtaaaaaaaaaa 13618322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 44380916 - 44380849
Alignment:
Q  190 aacaattacatatgtcattttttggtagtagatgttaatgatactttttatttttatgattaaaataa 257  Q
    |||||||||| | | | ||||||||||||||||||||||| |||||||||||||||| ||| ||||||    
T  44380916 aacaattacaaacgccgttttttggtagtagatgttaatggtactttttatttttataattgaaataa 44380849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 44382730 - 44382658
Alignment:
Q  190 aacaattacatatgtcattttttggtagtagatgttaatgatac-----tttttatttttatgattaaaataa 257  Q
    |||||||||||||||| ||| |||||||||||||||||||||||      |||||||||||||||| ||||||    
T  44382730 aacaattacatatgtcgtttattggtagtagatgttaatgatacgatatattttatttttatgattgaaataa 44382658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 37646740 - 37646809
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaat 325  Q
    ||||||||||||||||| ||||||||||||||||| | |||||   |||| |||| ||||||| ||||||    
T  37646740 aaggcttaaatattgcattcgtccctgcaaatatgcttcgttttgattttagtccctgtaaaaaaaaaat 37646809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 44380518 - 44380466
Alignment:
Q  14 gaatcttggtgaaggcggtgttcaatgtaatgatatcgatattatgagttggca 67  Q
    |||||||||| ||||||||||||| | |||| ||||| ||||||||||||||||    
T  44380518 gaatcttggtaaaggcggtgttcagtctaataatatc-atattatgagttggca 44380466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 41315892 - 41315984
Alignment:
Q  251 aaaataaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41315892 aaaataaggcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 41315984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 23254753 - 23254667
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23254753 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 23254667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 15874229 - 15874313
Alignment:
Q  259 gcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874229 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 15874313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 42305903 - 42305990
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  42305903 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtcctcgtaaaataaaaattcagaaatcagtccccgc 42305990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 23254377 - 23254462
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23254377 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 23254462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 42306280 - 42306195
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccg 342  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42306280 aggcttaaatattgaactcgtccctccaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccg 42306195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 20878692 - 20878778
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20878692 aggcttaaacattccactcatccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 20878778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 257 - 338
Target Start/End: Original strand, 38484460 - 38484541
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtc 338  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38484460 aggcttaaatattgcactcgtctctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtc 38484541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 15874606 - 15874522
Alignment:
Q  255 taaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 339  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  15874606 taaggcttaagtattgcactcgtccctgcaaatatgccccgtttaagttttggtctttgtaaaataaaaattcagaaatcagtcc 15874522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 41316274 - 41316192
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 340  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  41316274 aggcttaaatattgcactcgtccctgcaaatatggttcgtttaagttttggtccttgtaaaat-aaaattcagaaatccgtccc 41316192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 251 - 338
Target Start/End: Complemental strand, 55893553 - 55893466
Alignment:
Q  251 aaaataaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtc 338  Q
    |||| ||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  55893553 aaaagaaggcttaaatattgcactcgtccctgtaaatatggctcgtttaagttttggtccttgaaaaataaaaattcagaaatcagtc 55893466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 55893213 - 55893289
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaat 333  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  55893213 aggcttaaatattgcacccgtctctgcaaatatggcccgtttaagttttggttattgtaaaataaaaattcagaaat 55893289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 326
Target Start/End: Complemental strand, 38485254 - 38485175
Alignment:
Q  248 attaaaataa-ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaatt 326  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||| |||| ||||||| |||||||    
T  38485254 attaaaataatggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtccctgtaaaaaaaaaatt 38485175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 20879032 - 20878988
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagt 302  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  20879032 ggcttaaatattacactcgtccctgcaaatatggcccgtttaagt 20878988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 3068772 - 3068859
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3068772 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 3068859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 3069151 - 3069064
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3069151 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 3069064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 3305617 - 3305704
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3305617 aaggcttaaatattgaactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 3305704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 3305995 - 3305909
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  3305995 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcttccttgtaaaataaaaatttagaaatcagtccccgc 3305909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 8274357 - 8274300
Alignment:
Q  197 acatatgtcattttttggtagtagatgttaatgatactttttatttttatgattaaaa 254  Q
    ||||||||||| ||||  | ||||||||||||||| ||||| ||||||||| ||||||    
T  8274357 acatatgtcatcttttaatggtagatgttaatgattcttttcatttttatgtttaaaa 8274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 33794433 - 33794519
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33794433 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 33794519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 40560834 - 40560749
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40560834 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 40560749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 5048386 - 5048294
Alignment:
Q  251 aaaataaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5048386 aaaataaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaaatcagtccccgc 5048294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 20124653 - 20124740
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20124653 aaggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgc 20124740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 14783734 - 14783820
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14783734 aggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 14783820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 343
Target Start/End: Original strand, 31724350 - 31724438
Alignment:
Q  255 taaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31724350 taaggcttaaatattgcactcgtccatgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtccccgc 31724438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 2439769 - 2439855
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  2439769 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaaatcaatccccgc 2439855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 5048003 - 5048089
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5048003 aggcttaaatattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgc 5048089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 2440137 - 2440060
Alignment:
Q  266 tattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2440137 tattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgc 2440060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 14784097 - 14784027
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgt-aaaataaaaatt 326  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| |||| ||| ||||||||||||    
T  14784097 aggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtccctgtaaaaataaaaatt 14784027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 31724725 - 31724657
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaa 324  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||  ||||| ||||||    
T  31724725 aaggcttaaatattgcactcgtccttgcaaatatggcccgtttaagtttttgtcccggtaaattaaaaa 31724657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 40560473 - 40560554
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 339  Q
    ||||||||||||||||| ||||||||||||||||   ||||| | |||| |||| ||||||| ||||||||||||||||||||    
T  40560473 aggcttaaatattgcacccgtccctgcaaatatgcctcgttttaattttagtccctgtaaaa-aaaaattcagaaatcagtcc 40560554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 33794806 - 33794727
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 339  Q
    |||||||||||||||||||||||||||||||||   ||||| | |||| |||| ||||||  ||||| ||||||||||||||    
T  33794806 ggcttaaatattgcactcgtccctgcaaatatgcctcgttttaattttagtccctgtaaa--aaaaaatcagaaatcagtcc 33794727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 4732060 - 4731973
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4732060 aaggcttaaatattgcactcatccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 4731973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 12414214 - 12414127
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  12414214 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgc 12414127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 12426274 - 12426187
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  12426274 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgc 12426187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 4731715 - 4731800
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  4731715 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagatttggtccttgtaaaataaaaattcagaaatcagttcccgc 4731800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 12413837 - 12413904
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaa 324  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||| |||||    
T  12413837 aggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttcgtccctctaaaaaaaaaa 12413904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 12425897 - 12425964
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaa 324  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||| |||||    
T  12425897 aggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttcgtccctctaaaaaaaaaa 12425964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 39760423 - 39760509
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39760423 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaattagtccccgc 39760509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 31155718 - 31155632
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31155718 aggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 31155632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 31156269 - 31156183
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31156269 aggcttaaatattgcattcgtccctacaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgc 31156183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 39761689 - 39761607
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 340  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  39761689 ggcttaaatattgcacttgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 39761607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 31155893 - 31155974
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 339  Q
    |||||||||||||  ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  31155893 ggcttaaatattgatctcgtccctgcaaatatgacacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 31155974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 31155368 - 31155430
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaa 318  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||| |||| ||||||||||||    
T  31155368 aaggcttaaatattgtactcgtccatgcaaatatggcccgtttaattttttgtccttgtaaaa 31155430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 255 - 343
Target Start/End: Complemental strand, 33294 - 33206
Alignment:
Q  255 taaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33294 taaggtttaaatattgcactcgtccctgcaaatatggtccgtttatgttttggtccttgtaaaataaaaattcagaaatcagtccccgc 33206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 32959 - 33005
Alignment:
Q  297 ttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32959 ttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 33005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 37873415 - 37873499
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 340  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37873415 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 37873499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 24825935 - 24825850
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24825935 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgaaaaataaaaattcagaaatcagtccccgc 24825850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 24825552 - 24825644
Alignment:
Q  251 aaaataaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24825552 aaaaaaaggcttaaatattgcactcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaaatcagtctccgc 24825644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 32793160 - 32793076
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 340  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32793160 aaggcttaaatattgcactcgtccctgcaaatatagcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 32793076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 32792783 - 32792868
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32792783 ggcttaaatattgcactcgtccttgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcaatccccgc 32792868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 11324425 - 11324346
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatca 335  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  11324425 aaggcttaaatattgcattcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaaatca 11324346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 37879226 - 37879143
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 340  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37879226 aggcttaaatattgtactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcaatccc 37879143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 9402563 - 9402627
Alignment:
Q  261 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaat 325  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  9402563 ttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaat 9402627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 11324056 - 11324119
Alignment:
Q  261 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaa 324  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||| |||||    
T  11324056 ttaaatattgcactcgtccctgcaaatatggcccgattaagttttcgtccctgtaaaaaaaaaa 11324119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 7849 - 7765
Alignment:
Q  259 gcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7849 gcttaaatattgcactcgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 7765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 7491 - 7575
Alignment:
Q  259 gcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  7491 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatcaatccccgc 7575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 343
Target Start/End: Original strand, 7015 - 7103
Alignment:
Q  255 taaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  7015 taaggcttaaatattgcactcgttcctgcaaatatggtccgtttaagttttggtccttataaaataaaaattcagaaatcaatccccgc 7103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 7328 - 7243
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328 ggcttaaatattggattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 7243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 10952 - 11035
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 339  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10952 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtcc 11035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 11431 - 11349
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 339  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11431 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 11349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 1745 - 1829
Alignment:
Q  259 gcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  1745 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatcaatccccgc 1829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 20582638 - 20582718
Alignment:
Q  260 cttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 340  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20582638 cttaaatattgcactcgtccctacaaatatagtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 20582718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 16368976 - 16368893
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 340  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  16368976 aggcttaaatattgcactcgtccctgcaaatatgatccgtttaagttttggtccgtgtaaaatgaaaattcagaaatcagtccc 16368893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 16766288 - 16766374
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    ||||||||||||||||||||||||||||||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||    
T  16766288 aggcttaaatattgcactcgtccctgcaaatatgacccatttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgc 16766374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 257 - 337
Target Start/End: Original strand, 6851248 - 6851328
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagt 337  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  6851248 aggcttaaatattgcactcgtccatgcaaatatgatccgtttaagttttggtctttgtaaaataaaaattcagaaatcagt 6851328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 33746710 - 33746794
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 340  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  33746710 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtccatgtaaaataaaaattcagaaatcaatccc 33746794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 16766635 - 16766556
Alignment:
Q  258 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagt 337  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  16766635 ggcttaaatattgcaatcgtccctgcaaatatggcccgtttatgttttggtccttgtaaaataaaaattcagaaatcagt 16766556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 29847056 - 29846978
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatc 334  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  29847056 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtctctgtaaaataaaaattcagaaatc 29846978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 11242285 - 11242377
Alignment:
Q  251 aaaataaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||| |||||||||||||||||||||||||   ||||||||  | ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11242285 aaaagaaggcttaaatattgcactcgtccccataaatatggctcatttaagttttgatccttgtaaaataaaaattcagaaatcagtccccgc 11242377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 257 - 341
Target Start/End: Complemental strand, 11246427 - 11246343
Alignment:
Q  257 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcccc 341  Q
    ||||||||||||||||||| |||||||||||||| || ||||||||||  |||||||||||||||||||||| ||||||||||||    
T  11246427 aggcttaaatattgcactcatccctgcaaatatgatctgtttaagtttgagtccttgtaaaataaaaattcacaaatcagtcccc 11246343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 323
Target Start/End: Complemental strand, 33747032 - 33746961
Alignment:
Q  252 aaataaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaa 323  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  33747032 aaattaggcttaaatattgcacccgtccctgcaaatatggcccgtttaagttttcgtccttgtaaaaaaaaa 33746961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 343
Target Start/End: Complemental strand, 20582957 - 20582898
Alignment:
Q  284 aaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 343  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  20582957 aaatatggcccgtttaagttttggtccttgtaaaataaaaatttagaaatcagaccccgc 20582898  T

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Target: chr6; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 16368638 - 16368707
Alignment:
Q  255 taaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaa 324  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||| |||| ||||||| |||||    
T  16368638 taaggcttaaatattgcactcgtccctgcaaatatggcatgtttaagttttcgtccctgtaaaaaaaaaa 16368707  T

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Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 29846787 - 29846855
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaa 324  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||||| |||| ||||||| |||||    
T  29846787 aaggcttaaatattgcactcgtccctgcaaatatgggtcatttaagttttcgtccctgtaaaaaaaaaa 29846855  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 6851616 - 6851549
Alignment:
Q  256 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaa 324  Q
    |||||||||||||||||| |||| ||||||||||||  |||||||||||| || | ||||||| |||||    
T  6851616 aaggcttaaatattgcac-cgtctctgcaaatatggctcgtttaagttttcgttcctgtaaaaaaaaaa 6851549  T

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