View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13899_high_17 (Length: 450)
Name: NF13899_high_17
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 69 - 437
Target Start/End: Original strand, 34348058 - 34348427
Alignment:
| Q |
69 |
ataataaattaagcggtttacgatgttaaataattatttccaacatgctatttgtgtttacaatgttaa-tgttaaatactcaaggtttcgaaatagtca |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
34348058 |
ataataaattaagcggtttacgatgttaaataattatttccaacatgctatttgtgtttacaatgttaaatgttaaatactcaaggtttcgaaataatca |
34348157 |
T |
|
| Q |
168 |
cgtggtctcctagctataggataaaatccgtatatacttttgaacaagtaaaagtatacaactattttatgatggtatcaattttttcctatagatcata |
267 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34348158 |
cgtggtctcctacctataggataaaatccgtttatacttttgaacaagtaaaagtatacaactattttatgatggtatcaattttttcctatagatcata |
34348257 |
T |
|
| Q |
268 |
tatagcatacatttcatttagtttttgatttatgcttcaaagaaacattaacaaatgagtgtatgtttaagactttaatgacttcatcaaatttaaagtg |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34348258 |
tatagcatacatttcatttagtttttgatttatgcttcaaagaaacattaacaaatgagtgtatgtttaagactttaatgacttcatcaaatttaaagtg |
34348357 |
T |
|
| Q |
368 |
tccatagctctatcagttaggcaggttttatgcgtagtttatggtagaaatgaaaaatatggttgatggt |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34348358 |
tccatagctctatcagttaggcaggttttatgcgtagtttatggtagaaatgaaaaatatggttgatggt |
34348427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University