View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13899_high_18 (Length: 444)

Name: NF13899_high_18
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13899_high_18
NF13899_high_18
[»] chr3 (2 HSPs)
chr3 (12-293)||(34590465-34590746)
chr3 (237-293)||(53517357-53517413)
[»] chr4 (1 HSPs)
chr4 (12-293)||(32692326-32692607)
[»] chr2 (4 HSPs)
chr2 (15-296)||(24762084-24762365)
chr2 (15-192)||(24765789-24765966)
chr2 (221-293)||(24765961-24766032)
chr2 (248-294)||(21871592-21871638)
[»] chr6 (4 HSPs)
chr6 (235-427)||(4806190-4806381)
chr6 (295-355)||(4803772-4803832)
chr6 (313-427)||(4824143-4824257)
chr6 (296-425)||(4819126-4819256)
[»] chr7 (2 HSPs)
chr7 (248-292)||(8292323-8292367)
chr7 (253-293)||(34828001-34828041)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 34590746 - 34590465
Alignment:
Q  12 atgaaaatagtgggtaaaaggtaatctaaattcatcttgaacaaaccaaaagctaagtgctgacggtagagaagtgaaaaatgttgtatgtgcaacgcct 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  34590746 atgaaaatagtgggtaaaaggtaatctaaattcatcttgaacaaaccaaaagctaagtgctgacagtagagaagtgaaaaatattgtatgtgcaacgcct 34590647  T
Q  112 gttccgtgtcaggtgagacaaaaagcatttgttgagtgcaaaatctttggattaaatttgtgttggtgcaagacatataatccagggtgtgcaagtgcaa 211  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  34590646 gttccgtgtcaggtgagacaaaaagcatttgttgaatgcaaaatctttagattaaacttgtgttggtgcaagacatataatccaggatgtgcaagtgcaa 34590547  T
Q  212 tttaacttgtataattgcagtaatttttaaaattctagggtgtgcaggtgcaccccctcactaagaggtggaaccgcccctg 293  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  34590546 tttaacttatataattgcagtaatttttaaaattctagggtgtgtaggtgcacgccctcactaagaggtggaaccgcccctg 34590465  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 53517413 - 53517357
Alignment:
Q  237 tttaaaattctagggtgtgcaggtgcaccccctcactaagaggtggaaccgcccctg 293  Q
    |||||||||  ||||  ||||||||||| |||||||||||||||||  |||||||||    
T  53517413 tttaaaatttcaggggatgcaggtgcacaccctcactaagaggtggctccgcccctg 53517357  T

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Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 32692607 - 32692326
Alignment:
Q  12 atgaaaatagtgggtaaaaggtaatctaaattcatcttgaacaaaccaaaagctaagtgctgacggtagagaagtgaaaaatgttgtatgtgcaacgcct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  32692607 atgaaaatagtgggtaaaaggtaatctaaattcatcttgaacaaaccaaaaactaagtgctgacactagagaagtgaaaaatgttgtatgtgcaacgcct 32692508  T
Q  112 gttccgtgtcaggtgagacaaaaagcatttgttgagtgcaaaatctttggattaaatttgtgttggtgcaagacatataatccagggtgtgcaagtgcaa 211  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  32692507 gatccgtgtcaggtgagacaaaaagtatttgttgagtgcaaaatctttggattaaacttgtgttggtgcaagacatataatctagggtgtgcaagtgcaa 32692408  T
Q  212 tttaacttgtataattgcagtaatttttaaaattctagggtgtgcaggtgcaccccctcactaagaggtggaaccgcccctg 293  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  32692407 tttaactagtataattgcaataatttttaaaattctagggtgtgcaggtgcaccccctcactaagaagtggacccgcccctg 32692326  T

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Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 24762365 - 24762084
Alignment:
Q  15 aaaatagtgggtaaaaggtaatctaaattcatcttgaacaaaccaaaagctaagtgctgacggtagagaagtgaaaaatgttgtatgtgcaacgcctgtt 114  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  24762365 aaaatagtgggtaaaaggaaatctaaattcatcttgatcaaaccaaaatctaagtgctgacagtagagaagtgaaaaatgttgtatgtgcaacgtctgtt 24762266  T
Q  115 ccgtgtcaggtgagacaaaaagcatttgttgagtgcaaaatctttggattaaatttgtgttggtgcaagacatataatccagggtgtgcaagtgcaattt 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  24762265 ccgtgtcaggtgagacaaaaagcattggttgagtgcaaaatctttggattaaacttgtgttggtgcaagacatataatccagggtgtgcaattgcaattt 24762166  T
Q  215 aacttgtataattgcagtaatttttaaaattctagggtgtgcaggtgcaccccctcactaagaggtggaaccgcccctgcta 296  Q
    |||| ||||| |||| |||||||||||||| | |  |||||||||||||||||||||||||||||||||||| |||||||||    
T  24762165 aactagtatacttgctgtaatttttaaaatcccattgtgtgcaggtgcaccccctcactaagaggtggaaccacccctgcta 24762084  T

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Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 24765789 - 24765966
Alignment:
Q  15 aaaatagtgggtaaaaggtaatctaaattcatcttgaacaaaccaaaagctaagtgctgacggtagagaagtgaaaaatgttgtatgtgcaacgcctgtt 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||| |||||    
T  24765789 aaaatagtgggtaaaaggaaatctaaattcatcttgaacaaaccaaaagctaagtgctgatagtagagaagtgaaaaatgttgtaagtgcaacgtctgtt 24765888  T
Q  115 ccgtgtcaggtgagacaaaaagcatttgttgagtgcaaaatctttggattaaatttgtgttggtgcaagacatataat 192  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24765889 ccgtgtcaggtgagacaaaaagcattggttgagtgcaaaatctttggattaaacttgtgttggtgcaagacatataat 24765966  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 24765961 - 24766032
Alignment:
Q  221 tataattgcagtaatttttaaaattctagggtgtgcaggtgcaccccctcactaagaggtggaaccgcccctg 293  Q
    ||||||||||||||||||||||||   | ||| ||||||| |||||||||||||||| |||||||||||||||    
T  24765961 tataattgcagtaatttttaaaatctcaaggtatgcaggttcaccccctcactaaga-gtggaaccgcccctg 24766032  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 21871592 - 21871638
Alignment:
Q  248 agggtgtgcaggtgcaccccctcactaagaggtggaaccgcccctgc 294  Q
    |||| |||||||||||| |||||||||||||||||  ||||||||||    
T  21871592 agggggtgcaggtgcacaccctcactaagaggtggctccgcccctgc 21871638  T

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Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 235 - 427
Target Start/End: Complemental strand, 4806381 - 4806190
Alignment:
Q  235 tttttaaaattctagggtgtgcaggtgcaccccctcactaagaggtggaaccgcccctgctaccgacacaagaatcagactgaagttcttgaatgcaagc 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4806381 tttttaaaattctagggtgtgcaggtgcaccccctcactaagaggtggaaccgcccctgctaccgacacaagaatcagactgaagttcttgaatgcaaac 4806282  T
Q  335 gtcggttttggttggttcttgcttccgaaaagatatattaacctggttttcatttgtctgtgtaatggtttaccagaagttgctgaatattgg 427  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  4806281 gtcggttttgg-tggttctttcttccgaaaagatatattaacctggttttcatttgtgtgtgtaatgatttaccagaagttgctgaatattgg 4806190  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 4803832 - 4803772
Alignment:
Q  295 taccgacacaagaatcagactgaagttcttgaatgcaagcgtcggttttggttggttcttg 355  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||| | |||||||||    
T  4803832 taccgacacaagaatcagaccgaagttcttgaatgcaagtgtcggttttcggtggttcttg 4803772  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 427
Target Start/End: Complemental strand, 4824257 - 4824143
Alignment:
Q  313 actgaagttcttgaatgcaagcgtcggttttggttggttcttgcttccgaaaagatatatt-aacctggttttcatttgtctgtgtaatggtttaccaga 411  Q
    ||||| ||||| |||||||||  ||| ||||||| |||| |||||||| ||| |||||||| |||||||||| |||||||  |||| ||| |||||||||    
T  4824257 actgatgttctagaatgcaagtatcgtttttggt-ggtttttgcttccaaaaggatatattgaacctggtttacatttgtgagtgtcatgttttaccaga 4824159  T
Q  412 agttgctgaatattgg 427  Q
    |||| |||||||||||    
T  4824158 agtttctgaatattgg 4824143  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 425
Target Start/End: Complemental strand, 4819256 - 4819126
Alignment:
Q  296 accgacacaagaatcagactgaagttcttgaatgcaagcg--tcggttttggttggttcttgcttccgaaaagatata-ttaacctggttttcatttgtc 392  Q
    ||||||||| |||||||||| ||||||||||||||||||   | |||||  |  ||||||||||||| |||||||||| | |||||||||| ||||||      
T  4819256 accgacacatgaatcagact-aagttcttgaatgcaagcacattggtttcagc-ggttcttgcttccaaaaagatatactgaacctggtttacatttgcg 4819159  T
Q  393 tgtgtaatggtttaccagaagttgctgaatatt 425  Q
    ||| ||||||||||   |||||| |||||||||    
T  4819158 tgtataatggtttatttgaagtttctgaatatt 4819126  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 8292323 - 8292367
Alignment:
Q  248 agggtgtgcaggtgcaccccctcactaagaggtggaaccgcccct 292  Q
    |||| |||||||||||| |||||||||||||||||  ||||||||    
T  8292323 agggggtgcaggtgcacaccctcactaagaggtggctccgcccct 8292367  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 34828001 - 34828041
Alignment:
Q  253 gtgcaggtgcaccccctcactaagaggtggaaccgcccctg 293  Q
    |||||||||||| |||||||||||||||||  |||||||||    
T  34828001 gtgcaggtgcacaccctcactaagaggtggctccgcccctg 34828041  T

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