View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_high_19 (Length: 443)
Name: NF13899_high_19
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 426
Target Start/End: Original strand, 20995535 - 20995961
Alignment:
| Q |
6 |
agcagcacagacagcatagaaaattaaagaa-taagtagaaaag---acctcctactaaagaccaataatgacacgaaataggaaggnnnnnnnn-gcct |
100 |
Q |
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|||| |||| ||||||||||||||||||||| || ||||||||| ||| ||||| |||||||||||||||||| ||||||||||| |||| |
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| T |
20995535 |
agcaacacaaacagcatagaaaattaaagaaatatgtagaaaagtacaccccctaccaaagaccaataatgacacaaaataggaaggaaaaaaaaagcct |
20995634 |
T |
|
| Q |
101 |
aacaaaaccatggctccaagagataaaataggatccttagggtatgatggttaggttctaagacacccatgtcgtgtaagtccccgtcttgggagcaatc |
200 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20995635 |
aacaaaactatggctccaagagataaactaggatccttagggtatgatggttaggttctaagacacccatgtcgtgtaagtccccgtcttgggagcaatc |
20995734 |
T |
|
| Q |
201 |
tg-catatggcaactcatgcttctatgcgaagataagtcccttaaatagcgacaaggagcaacatgacattctaaattaaattacttgtgggaggataat |
299 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20995735 |
tgacatatggcaactcatgcttctatgtgaagataagtcccttaaatagcgacaaggagcaacatg---ttctaaattaaattacttgtgggaggataat |
20995831 |
T |
|
| Q |
300 |
tccatggttttcctaatttaggttatgtttagtataaagcaatctgac---atctggagcgatgagaatctttgtcccatgaagttagtcatcgtttata |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| || ||||||||||||||||| |
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| T |
20995832 |
tccatggttttcctaatttaggttatgtttagtataaagcaatctgacatgatctggagcgacgagaatctttatcccacgaggttagtcatcgtttata |
20995931 |
T |
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| Q |
397 |
tagtccttaggtaataattagtacatacct |
426 |
Q |
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| T |
20995932 |
tagtccttaggtaataattagtacatacct |
20995961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 415
Target Start/End: Complemental strand, 5750070 - 5749934
Alignment:
| Q |
279 |
aattacttgtgggaggataattccatggttttcctaatttaggttatgtttagtataaagcaatctgacatctggagcgatgagaatctttgtcccatga |
378 |
Q |
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|||||| ||||||||||||| ||||| ||||| || ||||||||| ||| ||||| | |||||| |||||| ||| || ||||||||| ||| ||||| |
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| T |
5750070 |
aattacatgtgggaggataagtccatagtttttatagcttaggttatatttggtatagatcaatctaacatctagagggacgagaatcttcgtcacatga |
5749971 |
T |
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| Q |
379 |
agttagtcatcgtttatatagtccttaggtaataatt |
415 |
Q |
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| T |
5749970 |
ggttaaccattgtttatatagtcctaaggtcataatt |
5749934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 40117744 - 40117666
Alignment:
| Q |
232 |
ataagtcccttaaatagcgacaaggagcaacatgacattctaaattaaattacttgtgggaggataattccatggtttt |
310 |
Q |
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| T |
40117744 |
ataagtcccttaaatagacatgaagagcaacatgacattctagagtcaattacctatgggaggataagtccatggtttt |
40117666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 408
Target Start/End: Original strand, 5719261 - 5719352
Alignment:
| Q |
317 |
ttaggttatgtttagtataaagcaatctgacatctggagcgatgagaatctttgtcccatgaagttagtcatcgtttatatagtccttaggt |
408 |
Q |
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||||||||| | ||||||| |||||| ||||||| | | |||||||||||| ||||| || |||| | |||||||||| ||||||||||| |
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| T |
5719261 |
ttaggttatatctagtatagagcaatatgacatcggtaaggatgagaatcttcatcccacgatgttattgatcgtttataaagtccttaggt |
5719352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 5614674 - 5614738
Alignment:
| Q |
351 |
tggagcgatgagaatctttgtcccatgaagttagtcatcgtttatatagtccttaggtaataatt |
415 |
Q |
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||||| |||||||||||| |||||| || |||| |||||||| ||||||||||||| |||||| |
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| T |
5614674 |
tggagggatgagaatcttcgtcccacgaggttatcaatcgtttacatagtccttaggtcataatt |
5614738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 415
Target Start/End: Complemental strand, 18680108 - 18679972
Alignment:
| Q |
279 |
aattacttgtgggaggataattccatggttttcctaatttaggttatgtttagtataaagcaatctgacatctggagcgatgagaatctttgtcccatga |
378 |
Q |
| |
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|||||| ||||||||||||| ||||| ||||| || ||||||||| ||| ||||| | |||||| |||||| ||| || ||||||||| ||| ||||| |
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| T |
18680108 |
aattacatgtgggaggataagtccatagtttttatagcttaggttatatttggtatagatcaatctaacatctagagggacgagaatcttcgtcacatga |
18680009 |
T |
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| Q |
379 |
agttagtcatcgtttatatagtccttaggtaataatt |
415 |
Q |
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|||| ||| |||||||||||||| |||| |||||| |
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| T |
18680008 |
ggttaaccattgtttatatagtcctaaggtcataatt |
18679972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 7142728 - 7142630
Alignment:
| Q |
317 |
ttaggttatgtttagtataaagcaatctgacatctggagcgatgagaatctttgtcccatgaagttagtcatcgtttatatagtccttaggtaataatt |
415 |
Q |
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||||||||| | | |||| ||||||| |||||||| || | ||||||||| |||||| || |||| ||||||||||||||||||||||| |||||| |
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| T |
7142728 |
ttaggttatatatggtatgaagcaatatgacatctctaggtacgagaatcttcgtcccacgaggttaaccatcgtttatatagtccttaggtcataatt |
7142630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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