View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_high_24 (Length: 431)
Name: NF13899_high_24
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_24 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 14456826 - 14456414
Alignment:
| Q |
19 |
gaaaagtggtcttcagttaccatgcctgtcaacttattgaaagaaatatctaaccgcgatagcttagaaagttgtcctaaactatctgggagggtaccat |
118 |
Q |
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| T |
14456826 |
gaaaaatggtcttcagttaccatgcctgtcaacttattgaaagaaagatctaactgcgatagcttagaaagttgtcctaaactatctgggagggtaccat |
14456727 |
T |
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| Q |
119 |
ttaatttattatcttcaagttccaaactgtttatatttttcaatgaccctaaggatacaggaatgggaccttcaagttgattatgtgcaagacttagacg |
218 |
Q |
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| T |
14456726 |
ttaatttattatcttcaagttccaaactgtttatatttttcaatgaccctaaggatacaggaataggaccttcaagttgattatgtgcaagacttagacg |
14456627 |
T |
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| Q |
219 |
ggctagattttcaagttgaactaaccaatctggaattttaccatgtagttggttgttggtcatttcaaaaaactcaagactaggaagaggttttttggaa |
318 |
Q |
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| T |
14456626 |
ggctaggttttcaagttgaactaaccaatctggaattttaccatgtagttggttgttggtcatttcaaaaaactcaagactaggaagaggttttttggaa |
14456527 |
T |
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| Q |
319 |
ggacaactatctattccttgaagaaattcaggtagagttcctgccatattgttatccgataaatcaagataattcaagttacagagttgacctatggaac |
418 |
Q |
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| T |
14456526 |
ggacaactatctattccttgaagaaattcaggtagagttcctgccatattgttatccgataaatcaagataattcaagttacagagttgacctatggaac |
14456427 |
T |
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| Q |
419 |
taggaataacacc |
431 |
Q |
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| T |
14456426 |
taggaataacacc |
14456414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 14470103 - 14470515
Alignment:
| Q |
19 |
gaaaagtggtcttcagttaccatgcctgtcaacttattgaaagaaatatctaaccgcgatagcttagaaagttgtcctaaactatctgggagggtaccat |
118 |
Q |
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| T |
14470103 |
gaaaaatgttcttcagttaccattcctgtcaattgattgaaagaaacatctaagtgtgacaacttagaaagctgtcctatactatatggtagagtaccat |
14470202 |
T |
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| Q |
119 |
ttaatttattatcttcaagttccaaactgtttatatttttcaatgaccctaaggatacaggaatgggaccttcaagttgattatgtgcaagacttagacg |
218 |
Q |
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| T |
14470203 |
ttaatttattccctgtaagtatcaagtaattgagatttggcagtgaccctatagaaactggaattggaccttcaagcaaattatatgcaagagtgatacc |
14470302 |
T |
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| Q |
219 |
ggctagattttcaagttgaactaaccaatctggaattttaccatgtagttggttgttggtcatttcaaaaaac-tcaagactaggaagaggttttttgga |
317 |
Q |
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| T |
14470303 |
aattagattgtctagctcaactaaccaatctgggattttaccatataactggttgttttccatgataaaatacatcaa-attaggaagaggttttcgaga |
14470401 |
T |
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| Q |
318 |
aggacaactatctattccttgaagaaattcaggtagagttcctgccatattgttatccgataaatcaagataattcaagttacagagttgacctatggaa |
417 |
Q |
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| T |
14470402 |
tggacattcatctattccttgaagaaattcaggtagagttcctgtcaaattgtttgttgataaaccaaaatatttcaacctacagagtttaccaatggaa |
14470501 |
T |
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| Q |
418 |
ctaggaataacacc |
431 |
Q |
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| T |
14470502 |
ctaggaataccacc |
14470515 |
T |
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