View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13899_high_26 (Length: 421)
Name: NF13899_high_26
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 53090350 - 53090734
Alignment:
| Q |
1 |
tacaagcaagcacatgacacactctgcaaaattgatgacaatctgcacttgtagtttgtaccctgtttcnnnnnnnnntcataggataggagaatcttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53090350 |
tacaagcaagcacatgacacactctgcaaa-ttgatgacaatctgcacttgtagtttgtaccctgtttcaaaaaaaaaacataggataggagaatcttat |
53090448 |
T |
|
| Q |
101 |
tgatggatggaccttcaattaaaatgtccaagaattccttattggtgatttaaataattcaagtaattaaccattttgatattctaataaaattgagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090449 |
tgatggatggaccttcaattaaaatgtccaagaattccttattggtgatttaaataattcaagtaattaaccattttgatattctaataaaattgagtga |
53090548 |
T |
|
| Q |
201 |
tgtgatggtgtatagaacctggtgtttgagtttggttgcagttgcatagagctctccagctaaaactttatcaccgaataatgtaacagcctctttgacg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090549 |
tgtgatggtgtatagaacctggtgtttgagtttggttgcagttgcatagagctctccagctaaaactttatcaccgaataatgtaacagcctctttgacg |
53090648 |
T |
|
| Q |
301 |
gacctgaatggcgcccttgtgtctatctctgtatttctggtgagcagcatcacaccctctttattcttattcatctttgtgttaga |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53090649 |
gacctgaatggcgcccttgtgtctatctctgtatttctggtgagcagcatcacaccctctttattcttattcatctttgtgttaga |
53090734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University