View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13899_high_28 (Length: 418)
Name: NF13899_high_28
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 4674775 - 4675163
Alignment:
| Q |
15 |
aatactatggctgtaactggtgatgctttaagagatggatcacttggcttgttaaaaccatttgtaacaatgtccactgcatttagagttgcaattgcag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4674775 |
aatactatggctgtaactggtgatgctttaagagatggatcacttggcttgttaaaaccatttgtaacaatgtccactgcatttagagttgcaattgcag |
4674874 |
T |
|
| Q |
115 |
cacctaaactgtgacctgttatagttatgcttatttcttcattcttgtatttttccactaaccttcttacctcacttaagacctgcacagattgataatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4674875 |
cacctaaactgtgacctgttatagttatgcttatttcttcattcttgtatttctccaccaaccttcttacctcacttaagacctgcacagatcgataatt |
4674974 |
T |
|
| Q |
215 |
atcaacatatcatacaacgacgctatgccaatttttnnnnnnngagaagcgctattgtgcaggacaatattcaccacacaacccgcacgacatgttatgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4674975 |
atcaacatatcatacaacgacgctatgccaattttttaaaaaagagaagcgctattgtgcaggacaatattcaccacacaactcgcacgacatgttatgt |
4675074 |
T |
|
| Q |
315 |
gacataacctcattgcttaagttaaatacattttaattgaaataaatgagcaaaatctgaaattgtgtgcgtgtatagtatgttgttgt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4675075 |
gacataacctcattgcttaagttaaatacattttaattgaaataaataagcaaaatctgaaattgtgtgtgtgtatagtatgttgttgt |
4675163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 6800770 - 6800694
Alignment:
| Q |
258 |
gagaagcgctattgtgcaggacaatattcaccacacaacccgcacgacatgttatgtgacataacctcattgcttaa |
334 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
6800770 |
gagaagtgttattgtgcacgacaatattcaccacacaacccgcacgacatgttatttggcataacctcattgcttaa |
6800694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 6800624 - 6800558
Alignment:
| Q |
337 |
taaatacattttaattgaaataaatgagcaaaatctgaaattgtgtgcgtgtatagtatgttgttgt |
403 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||||||||||||| || |||| ||||||||||| |
|
|
| T |
6800624 |
taaataaattttaattgaaataaatgaataagatctgaaattgtgcgctcatataatatgttgttgt |
6800558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 34548233 - 34548310
Alignment:
| Q |
87 |
tccactgcatttagagttgcaattgcagcacctaaactgtgacctgttatagttatgcttatttcttcattcttgtat |
164 |
Q |
| |
|
||||||| | ||| |||||||| |||| |||| |||||||| || |||| ||||||||| |||||||||||||||||| |
|
|
| T |
34548233 |
tccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtat |
34548310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 363
Target Start/End: Original strand, 43899996 - 43900085
Alignment:
| Q |
269 |
ttgtgcaggacaatattcaccacacaacccgcacgacatgttatgtgacataacctcattgcttaagttaaatacattttaattgaaataaatga |
363 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||| | ||||||||| |||||||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
43899996 |
ttgtgcatgacaatattcaccgcacgacccgcataatatgttatgtagcataaccttattgc-----ttaaatagattttaattgaaataaatga |
43900085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 5383962 - 5384039
Alignment:
| Q |
258 |
gagaagcgctattgtgcaggacaatattcaccacacaa-cccgcacgacatgttatgtgacataacctcattgcttaa |
334 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||| ||| ||| || ||||||||||||| |||||||| |||||||| |
|
|
| T |
5383962 |
gagaagtgttattgtgcacgacaatattcaccacgcaaccccacaagacatgttatgtggcataaccttgttgcttaa |
5384039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 5408858 - 5408898
Alignment:
| Q |
258 |
gagaagcgctattgtgcaggacaatattcaccacacaaccc |
298 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |||||| |
|
|
| T |
5408858 |
gagaagtgctattgtgcacgacaatattcaccacgcaaccc |
5408898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University