View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13899_high_30 (Length: 387)

Name: NF13899_high_30
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13899_high_30
NF13899_high_30
[»] chr4 (4 HSPs)
chr4 (80-373)||(54294688-54294981)
chr4 (9-83)||(54300054-54300128)
chr4 (8-83)||(54306207-54306282)
chr4 (50-84)||(54287439-54287473)
[»] chr6 (10 HSPs)
chr6 (169-329)||(33869506-33869664)
chr6 (268-362)||(25490554-25490647)
chr6 (268-373)||(29300419-29300524)
chr6 (306-373)||(34274418-34274485)
chr6 (306-361)||(32960373-32960428)
chr6 (289-373)||(34278100-34278182)
chr6 (290-373)||(26087233-26087313)
chr6 (306-373)||(34257923-34257995)
chr6 (203-263)||(32960460-32960517)
chr6 (290-373)||(25526524-25526607)
[»] chr8 (1 HSPs)
chr8 (226-359)||(5709559-5709693)
[»] chr3 (1 HSPs)
chr3 (226-359)||(2885726-2885860)
[»] chr2 (1 HSPs)
chr2 (226-359)||(16186188-16186322)
[»] chr7 (1 HSPs)
chr7 (161-250)||(42446592-42446680)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 80 - 373
Target Start/End: Complemental strand, 54294981 - 54294688
Alignment:
Q  80 caaatgattgaggagcttggtcataaagtgatgtttcctcaatgtcatcggatcataatttacaaggaaagtatcagtcctattggaggaataagttgtt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54294981 caaatgattgaggagcttggtcataaagtgatgtttcctcaatgtcatcggatcataatttacaaggaaagtatcagtcctattggaggaataagttgtt 54294882  T
Q  180 aattgttattcttgtttacacaaagaattatatgattgtggttatttggggtattaccttgtagacaaagtgactcgtcaattgtgtttatcacaattaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54294881 aattgttattcttgtttacacaaagaattatatgattgtggttatttggggtattaccttgtagacaaagtgactcgtcaattgtgtttgtcacaattaa 54294782  T
Q  280 ttttaattgaactaagaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggtttctat 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54294781 ttttaattgaactaagaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggtttctat 54294688  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 54300128 - 54300054
Alignment:
Q  9 gaagaatatttggtacaacaattagattgatttgaacagatatagccctattaaactataaataaaaagatcaaa 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54300128 gaagaatatttggtacaacaattagattgatttgaacagatatagccctattaaactataaataaaaagatcaaa 54300054  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 54306282 - 54306207
Alignment:
Q  8 cgaagaatatttggtacaacaattagattgatttgaacagatatagccctattaaactataaataaaaagatcaaa 83  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||    
T  54306282 cgaagaatttttggtacaacaattagattgatttgaacaaatatagccctataaaactataaattaaaagatcaaa 54306207  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 54287473 - 54287439
Alignment:
Q  50 atagccctattaaactataaataaaaagatcaaat 84  Q
    ||||||||||||||||| |||||||||||||||||    
T  54287473 atagccctattaaactaaaaataaaaagatcaaat 54287439  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 329
Target Start/End: Original strand, 33869506 - 33869664
Alignment:
Q  169 aataagttgttaattgttattcttgtttacacaaagaattatatgattgtggttatttggggtattaccttgtagacaaagtgactcgtcaattgtgttt 268  Q
    ||||||| |||||||||| || |||||| || |||||| |||||| ||||||||||| ||| |||||||| ||| |||| | |||| |||||||||| ||    
T  33869506 aataagtagttaattgtttttattgttttca-aaagaagtatatggttgtggttatt-gggatattacctagtaaacaatgcgacttgtcaattgtgctt 33869603  T
Q  269 atcacaattaattttaattgaactaagaaactacttgatcttactttagcatttttatttt 329  Q
    |||||||||  | | || | |||||| ||||||||| ||||| |||| ||||||| |||||    
T  33869604 atcacaattgttgtcaagtaaactaaaaaactactttatcttgcttttgcattttgatttt 33869664  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 25490554 - 25490647
Alignment:
Q  268 tatcacaattaattttaattgaactaagaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaacttat 362  Q
    ||||||||||| | | ||||  |||||||| |||||||||||| |||| ||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  25490554 tatcacaattattgtcaattatactaagaatctacttgatcttgcttttgcatttttaatttgaat-gttactctcgttttatttgcaaacttat 25490647  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 373
Target Start/End: Original strand, 29300419 - 29300524
Alignment:
Q  268 tatcacaattaattttaattgaactaagaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggt 367  Q
    ||||||||||| | | || | ||||| |||||||||||| ||| |||| |||||||||||||||||| |||||||  |||||||| ||||||||| |||     
T  29300419 tatcacaattattgtcaagtaaactaggaaactacttgaacttgcttttgcatttttattttgaatgtttactcttgttttattttcaaacttatctggc 29300518  T
Q  368 ttctat 373  Q
    ||||||    
T  29300519 ttctat 29300524  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 34274485 - 34274418
Alignment:
Q  306 atcttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggtttctat 373  Q
    ||||| |||| |||||||||||||||||| |||||  |||||||||||||||||| ||||||||||||    
T  34274485 atcttgcttttgcatttttattttgaatgtttacttacattttatttgcaaacttgtgtggtttctat 34274418  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 32960428 - 32960373
Alignment:
Q  306 atcttactttagcatttttattttgaatggttactctcattttatttgcaaactta 361  Q
    ||||| |||| ||||||||||||| |||| | ||||||||||||||||||||||||    
T  32960428 atcttgcttttgcatttttattttaaatgttcactctcattttatttgcaaactta 32960373  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 34278182 - 34278100
Alignment:
Q  289 aactaagaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggtttctat 373  Q
    ||||| || ||| ||||||||| |||| |||||||| |||  |||| |||||||| |||||||||||||||||| ||| ||||||    
T  34278182 aactatgacactgcttgatcttgcttttgcattttttttt--aatgtttactctcgttttatttgcaaacttatttggcttctat 34278100  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 26087313 - 26087233
Alignment:
Q  290 actaagaaactacttgatcttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggtttctat 373  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||  |||  ||| ||||||| |||||| ||| ||||||||||    
T  26087313 actaagaaactacttgatcttgcttttgcatttttagtttgaat-ctta--ctcgttttattcgcaaacatatctggtttctat 26087233  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 34257995 - 34257923
Alignment:
Q  306 atcttactttagcatttttattttgaat-----ggttactctcattttatttgcaaacttatgtggtttctat 373  Q
    ||||| |||| |||||||||||||||||     | |||||||||| |||||||||||||| ||||||||||||    
T  34257995 atcttgcttttgcatttttattttgaatataatgtttactctcatcttatttgcaaacttgtgtggtttctat 34257923  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 32960517 - 32960460
Alignment:
Q  203 agaattatatgattgtggttatttggggtattaccttgtagacaaagtgactcgtcaattg 263  Q
    |||| |||||||||||||||||| ||||||||   ||||| ||||||||||| ||||||||    
T  32960517 agaactatatgattgtggttattgggggtatt---ttgtaaacaaagtgacttgtcaattg 32960460  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 25526607 - 25526524
Alignment:
Q  290 actaagaaactacttgatc-ttactttagcatttttattttgaatggttactctcattttatttgcaaacttatgtggtttctat 373  Q
    ||||||||||||||||||| || | || ||||||||| ||||||| || |||||| ||||||||| ||||| ||  |||||||||    
T  25526607 actaagaaactacttgatctttgcatttgcatttttagtttgaat-gtcactctcgttttatttgaaaactaatcaggtttctat 25526524  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 359
Target Start/End: Complemental strand, 5709693 - 5709559
Alignment:
Q  226 tggggtattaccttgtagacaaagtgactcgtcaattg-tgtttatcacaattaattttaattgaactaagaaactacttgatcttactttagcattttt 324  Q
    |||| |||||| ||||| |||||||||||  |||| || || ||| ||||||| || | | || || || |||||||||||||||| |||| ||||||||    
T  5709693 tgggatattactttgtaaacaaagtgacttctcaaatggtgcttaccacaattcatgtcatttaaattatgaaactacttgatcttgcttttgcattttt 5709594  T
Q  325 attttgaatggttactctcattttatttgcaaact 359  Q
    ||||| |||| || | ||| |||||||||||||||    
T  5709593 atttttaatgttttcgctcgttttatttgcaaact 5709559  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 359
Target Start/End: Original strand, 2885726 - 2885860
Alignment:
Q  226 tggggtattaccttgtagacaaagtgactcgtcaattg-tgtttatcacaattaattttaattgaactaagaaactacttgatcttactttagcattttt 324  Q
    |||| |||||| ||||| |||||||||||  |||| || || ||| ||||||| || | | || || || |||||||||||||||| |||| ||||||||    
T  2885726 tgggatattactttgtaaacaaagtgacttctcaaatggtgcttaccacaattcatgtcatttaaattatgaaactacttgatcttgcttttgcattttt 2885825  T
Q  325 attttgaatggttactctcattttatttgcaaact 359  Q
    ||||| |||| || | ||| |||||||||||||||    
T  2885826 atttttaatgttttcgctcgttttatttgcaaact 2885860  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 359
Target Start/End: Complemental strand, 16186322 - 16186188
Alignment:
Q  226 tggggtattaccttgtagacaaagtgactcgtcaattg-tgtttatcacaattaattttaattgaactaagaaactacttgatcttactttagcattttt 324  Q
    |||| |||||| ||||| |||||||||||  |||| || || ||| ||||||| || | | || || || |||||||||||||||| |||| ||||||||    
T  16186322 tgggatattactttgtaaacaaagtgacttctcaaatggtgcttaccacaattcatgtcatttaaattatgaaactacttgatcttgcttttgcattttt 16186223  T
Q  325 attttgaatggttactctcattttatttgcaaact 359  Q
    ||||| |||| || | ||| |||||||||||||||    
T  16186222 atttttaatgttttcgctcgttttatttgcaaact 16186188  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 42446592 - 42446680
Alignment:
Q  161 attggaggaataagttgttaattgttattcttgtttacacaaagaattatatgattgtggttatttggggtattaccttgtagacaaagt 250  Q
    ||||||||||||| |  ||||||||| ||||||||| ||| ||||  |||||||||||||||  ||| | |||||||||||| |||||||    
T  42446592 attggaggaataattaattaattgtttttcttgttttcaccaagaggtatatgattgtggtt-cttgagatattaccttgtatacaaagt 42446680  T

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