View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_high_33 (Length: 378)
Name: NF13899_high_33
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 30424158 - 30424321
Alignment:
| Q |
1 |
agtggagtttacttgaatttcaatgaataaataaaatgttcaaaagtgagttttcg-tagtgttttagtaaaatttgttggaacttagatagttgaaatt |
99 |
Q |
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| T |
30424158 |
agtggagtttacttgaatttcaatgaataaataaaatgttcaaaagtgagttttcggtagtgttttagtaaaatttgttggaacttagatagttgaaatt |
30424257 |
T |
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| Q |
100 |
taggaagttggaagattccaagagtaaatacaaaatcttgagacttagagcaaatgtggtactg |
163 |
Q |
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| T |
30424258 |
taggaagttggaagattccaagagtaaatacaaaatcttgagacttagagcaaatgtggtactg |
30424321 |
T |
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Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 224 - 360
Target Start/End: Original strand, 30424382 - 30424518
Alignment:
| Q |
224 |
cttccttaagcatctaaagatgttggaattagccttgtttagtagcagatgcatgtgaaaggatttaacataaaaattgtgacaatttataataattaaa |
323 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30424382 |
cttccttaagcatctaaagatgtcggaattagccttgtttagtagcagatgcatgtgaaaggatttaacataaaaattgtgacaatttataataattaaa |
30424481 |
T |
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| Q |
324 |
gataaatgctaccaatatattttctagtacttacata |
360 |
Q |
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| T |
30424482 |
gataaatgctaccaatatattttctagtacttacata |
30424518 |
T |
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