View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_high_35 (Length: 366)
Name: NF13899_high_35
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 5023611 - 5023960
Alignment:
| Q |
13 |
aatattgggtttatcgggtaaccagatgaatgcaatgcctggctagagctgggactggtgagcagtcctgatgctagtaatatttctgatatatatttgt |
112 |
Q |
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| T |
5023611 |
aatattgggtttatcgggtaaccagatgaatgcaatgcctggctagagctgggactggtgagcagtcctgatgctagtaatatttctgatatatatttgt |
5023710 |
T |
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| Q |
113 |
ggtcaggatcgttgtggtcactgaagtttgcgaagctttcatcatcattgtggtcaaattgttgaagaatttgaaccaaattatcagtgatcaagtcaat |
212 |
Q |
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| T |
5023711 |
ggtcaggatcgttgtggtcactgaagtttgcgaagctttcatcatcattgtggtcaaattgttgaagaatttgaaccaaattatcagtgatcaagtcaat |
5023810 |
T |
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| Q |
213 |
atcaatggtttcattgccaaagttgacttttgtgttagtgttggatgaaagagaaagaccttctgagtcctcctcactattatcataagtgttcagtatt |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
5023811 |
atcaatggttccattgccaaagttgacttttgtgttagtgttggatgaaagagaaagaccttctgagtcctcctcactattatcgtaagtgttcagtact |
5023910 |
T |
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| Q |
313 |
tcatctgtcgccataaatttgaagggtatcataagtaaatggaagaaaaa |
362 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
5023911 |
tcatctgtcgaaataaatttgaagggaatcataagtaaatggaagaaaaa |
5023960 |
T |
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