View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_high_37 (Length: 363)
Name: NF13899_high_37
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_37 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 3 - 363
Target Start/End: Complemental strand, 34344600 - 34344239
Alignment:
| Q |
3 |
aattatactttataaaatggtatatcataaagatttaaatgtatttaacttt-aagatatcaataatgtacgtacttttgatccaaaattgttttgtctt |
101 |
Q |
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| T |
34344600 |
aattattcttgataaaatggtatatcataaagatttaaatgtatttaacttttaagatatcaataatgtacgtacttttgatccaaaattgttttgtctt |
34344501 |
T |
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| Q |
102 |
ataagaaattgtgttatttaactctaatgcacatagaacaaatgaaataaataaagagagaaatttaaagtactagtccttcagaatatgttaatctttc |
201 |
Q |
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| T |
34344500 |
ataagaaattgtgttatttaactctaatgcacatagaacaaatgaaataaataaagagagaaatttaaagtactagtccttcagaatatgttaatctttc |
34344401 |
T |
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| Q |
202 |
ttctatatttgtcacctagggatctaacgaatcaattttcttggttccgacatattattcttttttacttccttccaattaaagagaagatgattaagtg |
301 |
Q |
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| T |
34344400 |
ttctatatttgtcacctagggatctaacgaatcaattttcttggttccgacatattattcttttttacttccttccaattaaagagaagatgattaagtg |
34344301 |
T |
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| Q |
302 |
tgatctttctttctttttccttccattgaggacaaaaacagtttcaaacatgagggctattt |
363 |
Q |
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| T |
34344300 |
tgatctttctttctttttccttccattgaggacaaaaacagtttgaaacatgagggctattt |
34344239 |
T |
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