View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_high_38 (Length: 358)
Name: NF13899_high_38
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 6989100 - 6989446
Alignment:
| Q |
18 |
atcagaagtgcttgcccttgaacttggtgtatcagattcttgacttctaggtgaacactcggattggtctccgtcctcggtctctaaaactgacaagtct |
117 |
Q |
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| T |
6989100 |
atcagaagtgcttgcccttgaacttggtgtatcagattcttgacttctaggtgaatactcggattggtctccgttctcagtctctaaaactgacaagtct |
6989199 |
T |
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| Q |
118 |
aataacatatatggtacattcattcaaacattagtacagcaaataaataattcaactgttttcttattgaattagt--------------gacggaaaaa |
203 |
Q |
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| T |
6989200 |
aataacatatatggtacattcattcaaacattagtacagcaaataaataattgaactgttttcttattgaattagtgacggaaaatttgagacggaaaaa |
6989299 |
T |
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| Q |
204 |
atgaaatccgtctctaatttgttcggtaattcaaccnnnnnnnagtagagatggaattaaagagtaaagataaaaggattgaaattaattattaccaata |
303 |
Q |
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| T |
6989300 |
atgaaatccgtctctaatttggtcggtaattcaaccttcttttagtagagatggaattaaagagtaaagataaaaggattgaaattaattattaccaata |
6989399 |
T |
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| Q |
304 |
ttagaaaaagaatcagaaaatccaggtcgtggtcgtctgcctatgct |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6989400 |
ttagaaaaagaatcagaaaatccaggtcgtggtcgtctgcctctgct |
6989446 |
T |
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