View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13899_high_42 (Length: 353)

Name: NF13899_high_42
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13899_high_42
NF13899_high_42
[»] chr1 (6 HSPs)
chr1 (17-211)||(29660666-29660860)
chr1 (208-348)||(29660908-29661048)
chr1 (87-134)||(23373361-23373408)
chr1 (40-74)||(48133094-48133128)
chr1 (87-153)||(50319244-50319310)
chr1 (87-128)||(1393096-1393137)
[»] chr8 (3 HSPs)
chr8 (32-71)||(26473882-26473921)
chr8 (95-160)||(40280250-40280315)
chr8 (40-72)||(2342526-2342558)
[»] chr5 (3 HSPs)
chr5 (86-128)||(36157912-36157954)
chr5 (87-128)||(12407738-12407779)
chr5 (87-170)||(12242723-12242806)
[»] chr2 (2 HSPs)
chr2 (40-81)||(14316967-14317008)
chr2 (87-129)||(18962114-18962156)
[»] chr6 (2 HSPs)
chr6 (87-129)||(30537022-30537064)
chr6 (36-80)||(3204691-3204735)
[»] chr4 (2 HSPs)
chr4 (87-125)||(50745952-50745990)
chr4 (34-74)||(18628699-18628739)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 29660666 - 29660860
Alignment:
Q  17 gaattttcattggtattaggtcatgtttggatagacaaattaattaagcgcttatagcgtaagtgtttgaatttttataacaaaagataaaataaaataa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29660666 gaattttcattggtattaggtcatgtttggatagacaaattaattaagcgcttatagcgtaagtgtttgaatttttataacaaaagataaaataaaataa 29660765  T
Q  117 atctgttttcataagctagcataaagagcatatggaagtaatctggaaacaactcatgcatttgtcaaaaactatcttaaacaattccacaagta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  29660766 atctgttttcataagctagcataaagagcatatggaagtaatctggaaacaacccatgcatttgtcaaaaactatctcaaacaattccacaagta 29660860  T

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Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 208 - 348
Target Start/End: Original strand, 29660908 - 29661048
Alignment:
Q  208 agtatattcattcgtgtagtgcagtccaatttctaccacctgcttcatggatccaaatctccatctataaattcattgaccacacataatgtccttcgat 307  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29660908 agtatattcattcatgtagtgcagtccaatttctaccacctgcttcatggatccaaatctccatctataaattcattgaccacacataatgtccttcgat 29661007  T
Q  308 ttgtgatccactttgagactctttgctggtttcttctctct 348  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  29661008 ttgtgatccactttgagactctttgctggtttcttatctct 29661048  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 23373408 - 23373361
Alignment:
Q  87 atttttataacaaaagataaaataaaataaatctgttttcataagcta 134  Q
    |||| |||| |||||||||||||||| | |||||||||||||||||||    
T  23373408 atttctatatcaaaagataaaataaagtcaatctgttttcataagcta 23373361  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 48133128 - 48133094
Alignment:
Q  40 tgtttggatagacaaattaattaagcgcttatagc 74  Q
    ||||||||||||||| |||||||||||||||||||    
T  48133128 tgtttggatagacaacttaattaagcgcttatagc 48133094  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 50319244 - 50319310
Alignment:
Q  87 atttttataacaaaagataaaataaaataaatctgttttcataagctagcataaagagcatatggaa 153  Q
    |||| ||||||||||||||||||||| | ||  ||||||||||||||| | || ||||| |||||||    
T  50319244 atttctataacaaaagataaaataaagtcaagttgttttcataagctatcctagagagcttatggaa 50319310  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 1393137 - 1393096
Alignment:
Q  87 atttttataacaaaagataaaataaaataaatctgttttcat 128  Q
    |||| ||||||||||| ||||||||| |||||||||||||||    
T  1393137 atttatataacaaaagttaaaataaagtaaatctgttttcat 1393096  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 26473921 - 26473882
Alignment:
Q  32 ttaggtcatgtttggatagacaaattaattaagcgcttat 71  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  26473921 ttaggtcatgtctggatagacaaattaattaagcgcttat 26473882  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 40280315 - 40280250
Alignment:
Q  95 aacaaaagataaaataaaataaatctgttttcataagctagcataaagagcatatggaagtaatct 160  Q
    |||||||||||||||||| ||||  ||||||||||||||| |   |||||| ||||||| ||||||    
T  40280315 aacaaaagataaaataaagtaaaattgttttcataagctatctagaagagcttatggaaataatct 40280250  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 2342558 - 2342526
Alignment:
Q  40 tgtttggatagacaaattaattaagcgcttata 72  Q
    |||||||||| ||||||||||||||||||||||    
T  2342558 tgtttggataaacaaattaattaagcgcttata 2342526  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 36157954 - 36157912
Alignment:
Q  86 aatttttataacaaaagataaaataaaataaatctgttttcat 128  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  36157954 aatttttataacaaaagataaaataaaataaaattgttttcat 36157912  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 12407779 - 12407738
Alignment:
Q  87 atttttataacaaaagataaaataaaataaatctgttttcat 128  Q
    |||| ||||||||||||||||||||| |||||||||||||||    
T  12407779 atttctataacaaaagataaaataaagtaaatctgttttcat 12407738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 12242806 - 12242723
Alignment:
Q  87 atttttataacaaaagataaaataaaataaatctgttttcataagctagcataaagagcatatggaagtaatctggaaacaact 170  Q
    |||| ||||||||||||||||||| | | ||  ||||||||||||||| | |  ||||| ||||||||||| ||| ||||||||    
T  12242806 atttgtataacaaaagataaaatagagtcaaattgttttcataagctatcttggagagcttatggaagtaagctgaaaacaact 12242723  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 14317008 - 14316967
Alignment:
Q  40 tgtttggatagacaaattaattaagcgcttatagcgtaagtg 81  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  14317008 tgtttggataaacaaattaattaagcgcttatagcataagtg 14316967  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 18962156 - 18962114
Alignment:
Q  87 atttttataacaaaagataaaataaaataaatctgttttcata 129  Q
    |||||||||||||||||||||||||| | || |||||||||||    
T  18962156 atttttataacaaaagataaaataaagttaaactgttttcata 18962114  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 30537064 - 30537022
Alignment:
Q  87 atttttataacaaaagataaaataaaataaatctgttttcata 129  Q
    |||| ||||||||||||||||||||||| ||| ||||||||||    
T  30537064 atttctataacaaaagataaaataaaattaatttgttttcata 30537022  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 3204735 - 3204691
Alignment:
Q  36 gtcatgtttggatagacaaattaattaagcgcttatagcgtaagt 80  Q
    |||||||||||||| |||| ||||| |||||||||||| ||||||    
T  3204735 gtcatgtttggataaacaacttaatcaagcgcttatagtgtaagt 3204691  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 50745952 - 50745990
Alignment:
Q  87 atttttataacaaaagataaaataaaataaatctgtttt 125  Q
    |||||||||||||||||||||||||||| || |||||||    
T  50745952 atttttataacaaaagataaaataaaatcaaactgtttt 50745990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 18628739 - 18628699
Alignment:
Q  34 aggtcatgtttggatagacaaattaattaagcgcttatagc 74  Q
    |||||||||||||||| |||| |||||||| ||||||||||    
T  18628739 aggtcatgtttggataaacaacttaattaatcgcttatagc 18628699  T

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