View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13899_high_44 (Length: 350)
Name: NF13899_high_44
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 68 - 308
Target Start/End: Original strand, 33885129 - 33885369
Alignment:
| Q |
68 |
ttttacatgtacaactaactaagcttgcaacacaagtattttcaacccaatttcactccatacatcataagcataactttgatactcgctacgagttatt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33885129 |
ttttacatgtacaactaactaagcttgcaacacaagtattttcaacccaatttcactccatacatcataagcataactttgatactcgctacgagttatt |
33885228 |
T |
|
| Q |
168 |
ttcatatgaatacaaagaggatatattcatgtggtagtttctttctaactctgttgtatgtctggccaatgatagaactgatgggttcacctaatgcaat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33885229 |
ttcatatgaatacaaagaggatatattcatgtggtagtttctttctaactctgttgtatgtctggccaatgatagaactgatgggttcacctaatgcaat |
33885328 |
T |
|
| Q |
268 |
gttgcttgcacactgttattgccagaactaggttggagatg |
308 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33885329 |
gttgcttgcagactgttattgccagaactaggttggagatg |
33885369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 68 - 308
Target Start/End: Complemental strand, 33959123 - 33958883
Alignment:
| Q |
68 |
ttttacatgtacaactaactaagcttgcaacacaagtattttcaacccaatttcactccatacatcataagcataactttgatactcgctacgagttatt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33959123 |
ttttacatgtacaactaactaagcttgcaacacaagtattttcaacccaatttcactccatacatcataagcataactttgatactcgctacgagttatt |
33959024 |
T |
|
| Q |
168 |
ttcatatgaatacaaagaggatatattcatgtggtagtttctttctaactctgttgtatgtctggccaatgatagaactgatgggttcacctaatgcaat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33959023 |
ttcatatgaatacaaagaggatatattcatgtggtagtttctttctaactctgttgtatgtctggccaatgatagaactgatgggttcacctaatgcaat |
33958924 |
T |
|
| Q |
268 |
gttgcttgcacactgttattgccagaactaggttggagatg |
308 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33958923 |
gttgcttgcagactgttattgccagaactaggttggagatg |
33958883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 33885088 - 33885134
Alignment:
| Q |
11 |
acatcatcatagttcaaccaaactaatttacttaacttctattttac |
57 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
33885088 |
acatcatcttagttcaaccaaactattttacttaacatctattttac |
33885134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 33959164 - 33959118
Alignment:
| Q |
11 |
acatcatcatagttcaaccaaactaatttacttaacttctattttac |
57 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
33959164 |
acatcatcttagttcaaccaaactattttacttaacatctattttac |
33959118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 52113 - 52232
Alignment:
| Q |
209 |
tttctaactctgttgtatgtctggccaatgatagaactgatgggttcacctaatgcaatgttgcttgcacactgttattgccagaactaggttggagatg |
308 |
Q |
| |
|
|||||| |||||||| || ||| | ||| ||||| ||||||||||||| ||||||||||| |||||| | ||| | ||||| ||| ||||||||||| |
|
|
| T |
52113 |
tttctatctctgttgaatacctgacaaatcatagagatgatgggttcacccaatgcaatgttccttgcagattgtga-tgccaagactgggttggagatg |
52211 |
T |
|
| Q |
309 |
gtttcttgcattatcttccct |
329 |
Q |
| |
|
| |||||||| |||||||||| |
|
|
| T |
52212 |
gcttcttgcactatcttccct |
52232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University