View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13899_high_47 (Length: 325)
Name: NF13899_high_47
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_47 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 26216634 - 26216944
Alignment:
| Q |
1 |
gatattgcaaacttttaggatgtttgcttattgttaaatcttagaggatatccatagtaccaaatagcagaggtgatatttatgattgcggatttgataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26216634 |
gatattgcaaacttttaggatgtttgcttattgttaaatcttagaggatatccatagtaccaaatagcagaggtgatatttatgattgcggatttgataa |
26216733 |
T |
|
| Q |
101 |
ctattttgtacatagaggtccactgtctctcacaaagattgaaagtagagagtaagattcaaagaaaatgtgaaaagttgtttccacacttttacaacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26216734 |
ctattttgtacatagaggtccactgtctctcacaaagattgaaagtagagagtaagattcaaagaaaatgtgaaaatttgtttccacacttttacaacat |
26216833 |
T |
|
| Q |
201 |
agggaacacgttgaaggaatattgcattagcctccaaactaacaaagattaaaataagttgaaacatacatgtattgatgtatatatatgtatagaaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26216834 |
agggaacacgttgaaggaatattgcattagcctccaaactaacaaagattaaaataagttgaaacatacatgtattgatgtatatatatgtatagaaata |
26216933 |
T |
|
| Q |
301 |
tcagctgtttg |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
26216934 |
tcagctgtttg |
26216944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University