View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_high_49 (Length: 321)
Name: NF13899_high_49
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 25896029 - 25895746
Alignment:
| Q |
17 |
actaacatggctttttactaatttagggtcccatctgcattttctttgaccctaaacatccatttgcatccaattgcagttctcttgggtggaagaggca |
116 |
Q |
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| T |
25896029 |
actaacctggctttttactaatttagggtcccatctgcattttctttgaccctaaacacccatttgcatccaattgcagttctgttgggtggaagaggca |
25895930 |
T |
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| Q |
117 |
caagagaccaagttttattcttctatagagctgaatattcctttttcatagctgccaaccacattgggtatttaagagcatgtttaacaaatttaggttc |
216 |
Q |
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| T |
25895929 |
caagagaccaagttttattcttctatagagctgaatattcctctttcatagctgccaaccacatcgggtatttaagagcatgtttaacaaatttaggttc |
25895830 |
T |
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| Q |
217 |
agtttggataaggaaaacactaagacctaatctacgtaaaggaatgccagttttggttcttgtttgcataggatgagtattaac |
300 |
Q |
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| T |
25895829 |
agtttggataaggaaaacactaggacctaatctacgtaaaggaatgccagttttggttcttgtttgcataggatgagtattaac |
25895746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 6870565 - 6870639
Alignment:
| Q |
55 |
attttctttgaccctaaacatccatttgcatccaattgcagttctcttgggtggaagaggcacaagagaccaagt |
129 |
Q |
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| T |
6870565 |
attttcttttatcctaaacacccatttacaaccaatagcttttctgttgggtggaaggggcacaagtgaccaagt |
6870639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 39581603 - 39581529
Alignment:
| Q |
55 |
attttctttgaccctaaacatccatttgcatccaattgcagttctcttgggtggaagaggcacaagagaccaagt |
129 |
Q |
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| T |
39581603 |
attttcttttatcctaaacacccatttacaaccaatagcttttctgttgggtggaaggggcacaagtgaccaagt |
39581529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 26530058 - 26529981
Alignment:
| Q |
101 |
ttgggtggaagaggcacaagagaccaagttttattcttctatagagctgaatattcctttttcatagctgccaaccac |
178 |
Q |
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| T |
26530058 |
ttggggggaagaggcacaagggaccatgttttatttttctcaagggtagagtattcctcttgcatagctgccaaccac |
26529981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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