View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_high_54 (Length: 306)
Name: NF13899_high_54
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_54 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 41378311 - 41378611
Alignment:
| Q |
1 |
tttgcatgcatatttcattgcagattttttgggttatactatacttctcactaaaaataacaattgatatagtcgatcatggcgatgaactcatcaaaat |
100 |
Q |
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| T |
41378311 |
tttgcatgcatatttcattgcagattttttgggttatactatacttctcactaaaaataacaattgatataattgatcatggcgatgaactcatcaaaat |
41378410 |
T |
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| Q |
101 |
tagaagggtcgtttctcattttctaacccaattctttacacagttttggatcattacattaccaattaagaaatagaaaagccgaggtgggtctcatctc |
200 |
Q |
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| T |
41378411 |
tagaagggtcgtttctcattttctaacccaattctttacacagttttggatcattacattaccaattaggaaatagaaaagccaaggtggg-----tctc |
41378505 |
T |
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| Q |
201 |
atctcatttatcacaattaacacattcataacgttgatcaaacaaataagaatttctatattcacaaagttacatcgcataaccccacttcattcactat |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41378506 |
atctcatttatcacaattaacacattcataactttgatcaaacaaataagaatttctatattcacaaagttacatcgcataaccccacttcattcactat |
41378605 |
T |
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| Q |
301 |
ccttta |
306 |
Q |
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|||||| |
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| T |
41378606 |
ccttta |
41378611 |
T |
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