View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_high_58 (Length: 285)
Name: NF13899_high_58
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_58 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 5023950 - 5024221
Alignment:
| Q |
1 |
tggaagaaaaaatgtaattgatgaagtgatgcatatgacagatgattttagaccatttgaagttcaatctatgatgcttagaaaagaagtgtgaaatata |
100 |
Q |
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| T |
5023950 |
tggaagaaaaaatgtaattgatgaagtgatgcatatgacagatgattttagaccatttgacattcaatctatgatgcttagaaaagaagtgtgaaatata |
5024049 |
T |
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| Q |
101 |
cctaaatcttttgatatgtctgatttccttttaaccggagaaggtgggtcttctctatagaatgaagcatcaagaacagacacgggactgggttgttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5024050 |
cctaaatcttttgatatgtctgatttccttttaaccggggaaggtgggtcttctctatagaatgaagcatcaagaacagacacgggactgggttgttctg |
5024149 |
T |
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| Q |
201 |
cagtaaccattgtttcaaccataaagctttccttgctcaagtcttgttctgcattctgatcatttctttcct |
272 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5024150 |
cagtaaccattgtttcaaccataaaactttccttgctcaagtcttgttctgcattctgatcatttctttcct |
5024221 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 4558322 - 4558412
Alignment:
| Q |
99 |
tacctaaatcttttgatatgtctgatttccttttaaccggagaaggtgggtcttctctatagaatgaagcatcaagaacagacacgggact |
189 |
Q |
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||||||||| |||||| | || |||||| |||| || ||||| ||||| ||||| ||||||||| ||||||||||||||| || ||||| |
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| T |
4558322 |
tacctaaattttttgaaacgttcgatttcgttttcactggagatggtggatcttccttatagaatgcagcatcaagaacagatacaggact |
4558412 |
T |
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