View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13899_high_60 (Length: 267)

Name: NF13899_high_60
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13899_high_60
NF13899_high_60
[»] chr8 (7 HSPs)
chr8 (1-253)||(17107380-17107632)
chr8 (9-253)||(17117206-17117450)
chr8 (57-233)||(17004218-17004394)
chr8 (9-253)||(17986454-17986698)
chr8 (9-233)||(17956292-17956516)
chr8 (9-254)||(17945294-17945539)
chr8 (2-226)||(17999234-17999458)
[»] chr1 (1 HSPs)
chr1 (3-251)||(17258046-17258294)
[»] chr2 (1 HSPs)
chr2 (180-213)||(34241423-34241456)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 17107632 - 17107380
Alignment:
Q  1 tagggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17107632 tagggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagt 17107533  T
Q  101 tccatctgaagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcact 200  Q
    |||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17107532 tccatcagaagccaccaatagcaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcact 17107433  T
Q  201 gctttgtctccaattttctttacttcatccaccttatattgatcttggttttg 253  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17107432 gctttgtctccaattttcttcacttcatccaccttatattgatcttggttttg 17107380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 17117206 - 17117450
Alignment:
Q  9 gttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttccatctg 108  Q
    ||||| ||||||||||||||||  | ||| |||  |||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| |    
T  17117206 gttcctggcttgactttgagaaccttatagagatgatcaggattcatacctcttgtatcatggtgacaaatagtcactgccttagctttagttccatcag 17117305  T
Q  109 aagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgctttgtc 208  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||  || | ||||||||||| || |||||||| ||| || |||||    
T  17117306 aagccaccaatggcaccatgtaaactgttgttgcattaacttggtgacaagaaaatataatatttttgaaattcattcgatgacacaacaccgcgttgtc 17117405  T
Q  209 tccaattttctttacttcatccaccttatattgatcttggttttg 253  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||    
T  17117406 tccaattttcttcacttcgtccaccctatattgatcttggttttg 17117450  T

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Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 57 - 233
Target Start/End: Complemental strand, 17004394 - 17004218
Alignment:
Q  57 cctcttgtatcatggtgacaaatagttagtgccttagctttagttccatctgaagccaccaatgacaccatgtaaactgttgttgcattaacttggtggc 156  Q
    ||||||||||||||||| || | |||||||||||||||||| ||||||||| |||||||||||| ||||||||||  ||| ||||||||||||||||| |    
T  17004394 cctcttgtatcatggtggcagacagttagtgccttagctttggttccatctaaagccaccaatggcaccatgtaagttgtagttgcattaacttggtgac 17004295  T
Q  157 aataaaataccatgtctttgaaattcaatctatgacacatcactgctttgtctccaattttctttacttcatccacc 233  Q
    |||||||||| |  | ||||||||| |||||||||||||||||  |||||||||||||||| || ||||||||||||    
T  17004294 aataaaatacaacatttttgaaatttaatctatgacacatcaccactttgtctccaatttttttcacttcatccacc 17004218  T

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Target: chr8; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 17986454 - 17986698
Alignment:
Q  9 gttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttccatctg 108  Q
    |||||||||||||||||||||| ||||||||| |||||||||| ||| ||||| || |||||||| || || ||||||||||| |||||||||||||| |    
T  17986454 gttccaggcttgactttgagaacttcataaagcacatcaggatccatacctctcgtgtcatggtggcatattgttagtgccttcgctttagttccatcag 17986553  T
Q  109 aagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgctttgtc 208  Q
    | ||||| || |  || |||||   || ||||||||| |||||||||||||||||||| |  |  | |||||| | | ||||||||||||| ||||||||    
T  17986554 aggccactaaaggaactatgtatgttgatgttgcattgacttggtggcaataaaatacaacttgatcgaaatttagtttatgacacatcacggctttgtc 17986653  T
Q  209 tccaattttctttacttcatccaccttatattgatcttggttttg 253  Q
    |||||||||||| ||||| |  ||  ||||||| |||||||||||    
T  17986654 tccaattttcttcacttcctgtactatatattggtcttggttttg 17986698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 17956292 - 17956516
Alignment:
Q  9 gttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttccatctg 108  Q
    ||||||||||| ||||||||||  || ||||| |||| ||||| ||| ||||  |||||||||||||| || ||||||||||||| ||| |||||||| |    
T  17956292 gttccaggcttaactttgagaacatcgtaaagcacattaggatccatacctcgagtatcatggtgacagattgttagtgccttagatttggttccatcgg 17956391  T
Q  109 aagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgctttgtc 208  Q
    | ||||||||||  |||||||||  |||||| ||||| |||||||||||||| ||||  |  | ||| |||||||||||||| ||||||||||| |||||    
T  17956392 atgccaccaatggaaccatgtaagttgttgtcgcattgacttggtggcaatagaatagaacttttttaaaattcaatctatggcacatcactgcgttgtc 17956491  T
Q  209 tccaattttctttacttcatccacc 233  Q
    ||| ||||| || ||||| ||||||    
T  17956492 tcctattttattcacttcttccacc 17956516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 17945294 - 17945539
Alignment:
Q  9 gttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttccatctg 108  Q
    |||||||||||||||| ||||| |||||| || | || ||||| ||| ||||||||||||||||| || |||||||||||||| | |||||||||||| |    
T  17945294 gttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggtggcagatagttagtgccttggatttagttccatcag 17945393  T
Q  109 aagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgctttgtc 208  Q
    | ||||||||||  |||||||||   ||||| || || |  ||||||||||| ||| | |  | ||| | ||||| |||||||||||||||||| |||||    
T  17945394 aggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaacctttttaagattcattctatgacacatcactgcgttgtc 17945493  T
Q  209 tccaattttctttacttcatccaccttatattgatcttggttttga 254  Q
    ||| |||||  | ||||| |||||| ||||||| |||||| |||||    
T  17945494 tcctatttttctcacttcctccaccatatattggtcttggctttga 17945539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 17999234 - 17999458
Alignment:
Q  2 agggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagtt 101  Q
    |||||| ||||| |||||||||||||||| |||||  || | ||  |||||||| |||||||| ||||||||||||  ||  | ||| ||| ||||| ||    
T  17999234 agggatagttcctggcttgactttgagaacttcatcgagcaaattcggattcatacctcttgtgtcatggtgacaagcagccaatgcattaactttactt 17999333  T
Q  102 ccatctgaagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactg 201  Q
    ||||| || |||| ||| |  |||||||||  ||||| |||||| |||||||| ||||||||||| |  |  | |||||||| || ||||||||| |||     
T  17999334 ccatcagaggccaacaaagggaccatgtaagttgttgatgcattcacttggtgacaataaaatacaactttctcgaaattcattcgatgacacattactc 17999433  T
Q  202 ctttgtctccaattttctttacttc 226  Q
    |||||||| |||||||| |||||||    
T  17999434 ctttgtctgcaattttccttacttc 17999458  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 17258046 - 17258294
Alignment:
Q  3 gggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaatagttagtgccttagctttagttc 102  Q
    |||||||| ||||| | |||||| |||  ||||||||| |  |||| |||||| |||||||| |||||||| |||| |||||  ||||||||||||  ||    
T  17258046 gggatggtaccaggttcgacttttagagcttcataaagcaactcagcattcatgcctcttgtgtcatggtggcaaacagttaaggccttagctttacctc 17258145  T
Q  103 catctgaagccaccaatgacaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaaattcaatctatgacacatcactgc 202  Q
    |||| |  || |||||||| ||||  ||| | |||||||| |  |||||||||||||  ||||| |  | || |||||||||||||||||||||||||||    
T  17258146 catcgggggctaccaatgataccacataagcagttgttgcttgcacttggtggcaattgaatacaactttttcgaaattcaatctatgacacatcactgc 17258245  T
Q  203 tttgtctccaattttctttacttcatccaccttatattgatcttggttt 251  Q
     |||||||||| ||| || ||||| ||||||  |||||| || ||||||    
T  17258246 attgtctccaacttttttcacttcctccaccacatattggtcctggttt 17258294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 34241456 - 34241423
Alignment:
Q  180 ttcaatctatgacacatcactgctttgtctccaa 213  Q
    ||||| ||||||||||||||||||||||||||||    
T  34241456 ttcaacctatgacacatcactgctttgtctccaa 34241423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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