View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13899_high_66 (Length: 249)

Name: NF13899_high_66

Description: NF13899

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13899_high_66

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 163; E-Value: 4e-87

Query Start/End: Original strand, 1 - 171

Target Start/End: Complemental strand, 32874678 - 32874508

Alignment:

Q	1	aattgaccatgtttgtggctagtgtcagttgaagaaccaaaacaacttctagcagaaagttgagctagcagtgtctgaaatcacaagaaattttgagcgt	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32874678	aattgaccatgtttgtggctagtgtcagttgaagaaccaaaacaacttctagcagaaagttgagctagcagtgtctgaaatcacaagaaattttgagcgt	32874579	T

Q	101	ttctgggagaaccacgtaatatctaccagatagtggtgccaagaaatttgtaaaatggaggcaacctacac	171	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32874578	ttctgggagaacgacgtaatatctaccagatagtggtgtcaagaaatttgtaaaatggaggcaacctacac	32874508	T

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Target: chr4; HSP #2

Raw Score: 37; E-Value: 0.000000000006

Query Start/End: Original strand, 201 - 237

Target Start/End: Complemental strand, 32874478 - 32874442

Alignment:

Q	201	tattttactttattattgtatatgattgaacctattc	237	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32874478	tattttactttattattgtatatgattgaacctattc	32874442	T

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