View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_high_70 (Length: 237)
Name: NF13899_high_70
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_high_70 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 11820786 - 11821022
Alignment:
| Q |
1 |
atctccaacattgttttctctcaaacaaacacttcattttccattgttcttaaaaactacatacgtaacgcacgtttcaacacaacttcaacgacaaaac |
100 |
Q |
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| T |
11820786 |
atctccaacattgttttctctcaaacaaacacttcattttccattgttcttaaaaactacatacgtaacgcacgtttcaacacaacttcaacgacaaaac |
11820885 |
T |
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| Q |
101 |
cattactcatagtaactccaaaacaaccctcacatgttcaatccactgttatatgtgccaagcaagtcaatattcaaattaaaatcagaagtggtggaca |
200 |
Q |
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| T |
11820886 |
cattactcatagtaactccaaaacaaccctcacatgttcaatccactgttatatgtgccaagcaagtcaatattcaaatcaaaatcagaagtggtggaca |
11820985 |
T |
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| Q |
201 |
tgattatgagggtatttcttatgtaaatcaatcaccc |
237 |
Q |
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| T |
11820986 |
tgattatgagggtatttcttatgtaaatcaatcaccc |
11821022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11835578 - 11835361
Alignment:
| Q |
1 |
atctccaacattgttttctctcaaacaaacacttcattttccattgttcttaaaaactacatacgtaacgcacgtttcaacacaacttcaacgacaaaac |
100 |
Q |
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| T |
11835578 |
atctccaacattgttttctcccaaacaaacctttcattttccactgtccttcaaaactacatccgtaacgcacgtttcaacacaacttcaataacaaaac |
11835479 |
T |
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| Q |
101 |
cattactcatagtaactccaaaacaaccctcacatgttcaatccactgttatatgtgccaagcaagtcaatattcaaattaaaatcagaagtggtggaca |
200 |
Q |
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| T |
11835478 |
cattactcatagtcactccaaaacaaccttcgcatgtccaatccactgtaatatgtgctaagcaagtcaacattcaaatcaaaataagaagcggtggaca |
11835379 |
T |
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| Q |
201 |
tgattatgagggtatttc |
218 |
Q |
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| T |
11835378 |
tgattacgagggtatttc |
11835361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 11933488 - 11933538
Alignment:
| Q |
175 |
caaattaaaatcagaagtggtggacatgattatgagggtatttcttatgta |
225 |
Q |
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| T |
11933488 |
caaatgaaaattagaagtggtggacatgactatgagggtgtttcctatgta |
11933538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 11946709 - 11946759
Alignment:
| Q |
175 |
caaattaaaatcagaagtggtggacatgattatgagggtatttcttatgta |
225 |
Q |
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| T |
11946709 |
caaatgaaaattagaagtggtggacatgactatgagggtgtttcctatgta |
11946759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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