View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13899_low_1 (Length: 742)

Name: NF13899_low_1
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13899_low_1
NF13899_low_1
[»] chr8 (4 HSPs)
chr8 (134-704)||(32536156-32536707)
chr8 (18-138)||(32537538-32537658)
chr8 (503-707)||(18481113-18481317)
chr8 (633-705)||(26440816-26440888)
[»] chr3 (11 HSPs)
chr3 (503-707)||(51976640-51976844)
chr3 (503-707)||(36684785-36684989)
chr3 (505-707)||(8705594-8705796)
chr3 (505-707)||(9057481-9057683)
chr3 (543-696)||(49758956-49759109)
chr3 (513-733)||(45736356-45736577)
chr3 (505-658)||(26390803-26390956)
chr3 (557-707)||(4978441-4978591)
chr3 (627-679)||(25131088-25131140)
chr3 (634-704)||(38998918-38998988)
chr3 (643-688)||(47165391-47165436)
[»] chr2 (4 HSPs)
chr2 (503-707)||(24543093-24543297)
chr2 (503-707)||(29894348-29894552)
chr2 (503-707)||(36364920-36365124)
chr2 (627-678)||(12555415-12555466)
[»] chr1 (9 HSPs)
chr1 (503-707)||(11351624-11351828)
chr1 (512-707)||(6784167-6784362)
chr1 (503-692)||(20639470-20639659)
chr1 (519-707)||(21515101-21515287)
chr1 (627-705)||(44839886-44839964)
chr1 (627-707)||(2536509-2536589)
chr1 (571-650)||(32988972-32989051)
chr1 (634-705)||(51080701-51080772)
chr1 (668-707)||(52823500-52823539)
[»] chr7 (3 HSPs)
chr7 (503-733)||(23820403-23820634)
chr7 (505-607)||(24808878-24808980)
chr7 (627-705)||(21118399-21118476)
[»] chr6 (2 HSPs)
chr6 (503-693)||(942573-942763)
chr6 (627-707)||(4513076-4513156)
[»] chr5 (3 HSPs)
chr5 (557-707)||(41197383-41197533)
chr5 (511-697)||(36779439-36779623)
chr5 (624-707)||(30376454-30376537)
[»] chr4 (5 HSPs)
chr4 (503-707)||(43989285-43989488)
chr4 (543-689)||(19315935-19316081)
chr4 (641-707)||(43813198-43813264)
chr4 (627-689)||(1394129-1394191)
chr4 (634-679)||(49407130-49407175)


Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 134 - 704
Target Start/End: Complemental strand, 32536707 - 32536156
Alignment:
Q  134 cttcccctaaaccaaattataagagacaagactattattacaagcaaaaatttattatttttaaactatctaatacttttatttttaagctaaagtcaag 233  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||                   |||| |||||| ||||||    
T  32536707 cttcctctaaaccaaattataagagacaagactactattacaagcaaaaatttattattttta-------------------tttttagctaatgtcaag 32536627  T
Q  234 acaaacctactaagtattgcattggacacttgccggtatgcaatagtcttgtatggtcacacgagatctagactgtctacacataaagagacacatttct 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  32536626 acaaacctactaagtattgcattggacacttgccggtatgcaatagtcttgtatggtcacacgagatctagagtgtctacacataaagagacacatttat 32536527  T
Q  334 ctaaaatgtgcaatcaaattattatttttattattaaaagaagtatctcattgtgtgtctaaacacaacagatttggtcctagttggattgtttctctcc 433  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||    
T  32536526 ctaaactgtgcaatcaaattattatttttattattaaaagaagtatctcattgtgtgtctaaacacaacatatttggtcttagtcggattgtttctctcc 32536427  T
Q  434 tctttgatatgtttatgtgggacaggctgttggtctttactctttacacgacattgcagctactcttttattatgatcatgttgattttgctttggatta 533  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32536426 tctttgatatgtttatgtgggataggctgttggtctttactctttacacgacattgcagctactcttttattatgatcatgtcgattttgctttggatta 32536327  T
Q  534 caagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctg 633  Q
    ||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||    
T  32536326 caagtttattgtagatcgctttcattcaaacctagacgataatagtgaactaggttgtattattcaggcttgtaaacaattgattgcttgtaattttatg 32536227  T
Q  634 aactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatc 704  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  32536226 aactcttatgtcgagttcaattgaaaacaagttaatggggtcgctcgtgaattagctagggtagccccatc 32536156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 32537658 - 32537538
Alignment:
Q  18 catcttgcattgcagttcacgatggtagactcttctctcaatatcccagatacaacaacactactcatgctattttcaccattgctcgtaaagaggtttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32537658 catcttgcattgcagttcacgatggtagactcttctctcaatatcccagatacaacaacactactcacgctattttcaccattgctcgtaaagaggtttg 32537559  T
Q  118 tatttttcttagctagcttcc 138  Q
    |||||||||||||||||||||    
T  32537558 tatttttcttagctagcttcc 32537538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 503 - 707
Target Start/End: Original strand, 18481113 - 18481317
Alignment:
Q  503 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 602  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  18481113 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 18481212  T
Q  603 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 702  Q
    ||||| ||| ||| | | ||||||||||| ||||||| ||||||||||||||||||   |||| ||||||||| ||| | |||||||||||||||| |||    
T  18481213 ttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggtaagtcaatggggtcactcataaattagctagggtagcccca 18481312  T
Q  703 tctca 707  Q
    |||||    
T  18481313 tctca 18481317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 633 - 705
Target Start/End: Original strand, 26440816 - 26440888
Alignment:
Q  633 gaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatct 705  Q
    ||||||| ||||||||||||||||||  |||| ||||||||| |||| ||| |||||||||||||| ||||||    
T  26440816 gaactctcatgtcgagttcaataggaggcaagctaatggggttgctcatgagttagctagggtagccccatct 26440888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 503 - 707
Target Start/End: Original strand, 51976640 - 51976844
Alignment:
Q  503 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 602  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  51976640 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 51976739  T
Q  603 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 702  Q
    ||||| | | ||| ||| ||||||||||| ||||||| ||| ||||||||||||||  ||||  ||||||||||||| ||||||||||||||||||||||    
T  51976740 ttgtagaaagttgtttgattgtaattttcagaactctcatgccgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagctcca 51976839  T
Q  703 tctca 707  Q
    |||||    
T  51976840 tctca 51976844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 503 - 707
Target Start/End: Original strand, 36684785 - 36684989
Alignment:
Q  503 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 602  Q
    |||||||  |||||||||||| |||||||| ||||| |  ||| || |  ||| ||||||| ||||  ||||||||||||||||||||||| |||||| |    
T  36684785 attatgacaatgttgattttgttttggattgcaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtatcattcaggc 36684884  T
Q  603 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 702  Q
    ||||| | | ||| | | ||||||||||| ||||||| ||||||||||||||||||  |||| |||||||||||||| |||||||||||||||||| |||    
T  36684885 ttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaattagctagggtagcccca 36684984  T
Q  703 tctca 707  Q
    |||||    
T  36684985 tctca 36684989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 505 - 707
Target Start/End: Original strand, 8705594 - 8705796
Alignment:
Q  505 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 604  Q
    ||||| ||||||||||||| |||||||| ||||| |  ||| || || ||| ||||||| ||||  |||||||||||||||||||||||||||||| |||    
T  8705594 tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 8705693  T
Q  605 gtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatc 704  Q
    |||   | ||| ||| ||||||||||| ||||||| ||||||||||||||||||  |||| ||||| |||||||  |||||||| ||||||||| |||||    
T  8705694 gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatc 8705793  T
Q  705 tca 707  Q
    |||    
T  8705794 tca 8705796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 505 - 707
Target Start/End: Original strand, 9057481 - 9057683
Alignment:
Q  505 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 604  Q
    ||||| ||||||||||||| |||||||| ||||| |  ||| || || ||| ||||||| ||||  |||||||||||||||||||||||||||||| |||    
T  9057481 tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 9057580  T
Q  605 gtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatc 704  Q
    |||   | ||| ||| ||||||||||| ||||||| ||||||||||||||||||  |||| ||||| |||||||  |||||||| ||||||||| |||||    
T  9057581 gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatc 9057680  T
Q  705 tca 707  Q
    |||    
T  9057681 tca 9057683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 543 - 696
Target Start/End: Complemental strand, 49759109 - 49758956
Alignment:
Q  543 tgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttat 642  Q
    |||| |||| ||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||||     ||| ||||||||||||||| ||||||||||    
T  49759109 tgtatatcgttttaattcaaacctagaggatagtagtgaactaggttgcattattcagacttgtaggctgttgcttgcttgtaattttcagaactcttat 49759010  T
Q  643 gtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggta 696  Q
    |||| |||||||||||  |||| ||||||| |||||| ||||||  ||||||||    
T  49759009 gtcgggttcaataggaggcaagctaatgggatcgctcatgaattgactagggta 49758956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 513 - 733
Target Start/End: Original strand, 45736356 - 45736577
Alignment:
Q  513 tgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataa 612  Q
    ||||||||||| |||||||| ||||| |  |||  | || ||| ||| ||||||||| ||||| |||||| |||||||||||||| ||  |||||   ||    
T  45736356 tgttgattttgttttggatttcaagtttgttgttcaacgttttaatttaaatctagatgatagcagtgaattaggttgtattatttaggtttgtaggcaa 45736455  T
Q  613 ttgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctcactcta 712  Q
    ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||    ||||||  ||||||| ||||||||||||||||  |||||||  |||    
T  45736456 ttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcagaccaatgggaacgctcgtaaattagctagggtagcctcatctcatgcta 45736555  T
Q  713 a-tcacacatttatgatgatgt 733  Q
    | || ||| |||||||||||||    
T  45736556 actcccacgtttatgatgatgt 45736577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 505 - 658
Target Start/End: Complemental strand, 26390956 - 26390803
Alignment:
Q  505 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 604  Q
    |||||| |||| || ||||||||||||| |||| |   ||||||||| ||| | | ||| ||||| |||||||||||||||||||| ||||| ||  |||    
T  26390956 tatgataatgtcgactttgctttggatttcaaggcacttgtagatcgttttaactgaaacctagaagatagtagtgaactaggttgcattatacaagctt 26390857  T
Q  605 gtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaatagga 658  Q
    ||| | | ||| ||||||||| ||||   ||||||  |||||||||||||||||    
T  26390856 gtagacagttgtttgcttgtagtttttataactctcgtgtcgagttcaatagga 26390803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 707
Target Start/End: Complemental strand, 4978591 - 4978441
Alignment:
Q  557 attcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaatag 656  Q
    ||||||| ||||  |||| |||| |||||||||||||||||| | ||||||   | ||| | | || |||||||| ||||||| |||||||||| ||||     
T  4978591 attcaaacctaggtgataatagtaaactaggttgtattattctggcttgtaggcacttgttcggttataattttcagaactctcatgtcgagtttaatat 4978492  T
Q  657 gaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 707  Q
    || |||||  |||| ||||| || |||||||||||| |||||  |||||||    
T  4978491 gagacaagccaatgaggtcgttcatgaattagctagcgtagccacatctca 4978441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 679
Target Start/End: Complemental strand, 25131140 - 25131088
Alignment:
Q  627 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctc 679  Q
    ||||||||||||| |||||||||||||||| ||  ||||||||||||||||||    
T  25131140 ttttctgaactctcatgtcgagttcaatagaaagtaagttaatggggtcgctc 25131088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 704
Target Start/End: Original strand, 38998918 - 38998988
Alignment:
Q  634 aactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatc 704  Q
    |||||| |||||||||| |||||||  |||| ||||||||||||||  |||||||| |||||||| |||||    
T  38998918 aactctcatgtcgagtttaataggaggcaagctaatggggtcgctcacgaattagcgagggtagccccatc 38998988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 688
Target Start/End: Complemental strand, 47165436 - 47165391
Alignment:
Q  643 gtcgagttcaataggaaacaagttaatggggtcgctcgtgaattag 688  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||||    
T  47165436 gtcgagttcaataggaggcaagtcaatggggtcgctcgtgaattag 47165391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 503 - 707
Target Start/End: Original strand, 24543093 - 24543297
Alignment:
Q  503 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 602  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  24543093 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 24543192  T
Q  603 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 702  Q
    ||||| ||| ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||| |||    
T  24543193 ttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaataggatgcaagccaatggggtcgctcatgaattagctagggtagcccca 24543292  T
Q  703 tctca 707  Q
    |||||    
T  24543293 tctca 24543297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 503 - 707
Target Start/End: Complemental strand, 29894552 - 29894348
Alignment:
Q  503 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 602  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||| ||||||||||||| |    
T  29894552 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactagattgtattattcaggc 29894453  T
Q  603 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 702  Q
    ||||| | | ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||| |||    
T  29894452 ttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagcccca 29894353  T
Q  703 tctca 707  Q
    |||||    
T  29894352 tctca 29894348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 503 - 707
Target Start/End: Original strand, 36364920 - 36365124
Alignment:
Q  503 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 602  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || || ||| ||||||| ||||  ||||| ||||||||||||||||||||||| ||    
T  36364920 attatgacaatgttgattttgttttggattccaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcatac 36365019  T
Q  603 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 702  Q
    |||||   | ||| | | |||| |||||| ||||||  ||||||||||||||||||  ||||  |||| |||||||| |||||||||||||||||| |||    
T  36365020 ttgtaggcagttgttcgattgtcattttcagaactcccatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagctagggtagcccca 36365119  T
Q  703 tctca 707  Q
    |||||    
T  36365120 tctca 36365124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 678
Target Start/End: Complemental strand, 12555466 - 12555415
Alignment:
Q  627 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgct 678  Q
    ||||| ||||||| ||||| ||||||||||||  ||||||||||||||||||    
T  12555466 ttttcagaactctcatgtcaagttcaataggaggcaagttaatggggtcgct 12555415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 4e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 503 - 707
Target Start/End: Complemental strand, 11351828 - 11351624
Alignment:
Q  503 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 602  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  11351828 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 11351729  T
Q  603 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 702  Q
    ||||| | | ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||| |||    
T  11351728 ttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagcccca 11351629  T
Q  703 tctca 707  Q
    |||||    
T  11351628 tctca 11351624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 512 - 707
Target Start/End: Original strand, 6784167 - 6784362
Alignment:
Q  512 atgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaata 611  Q
    |||||||||||| |||||||| |||||||  ||| || || ||| ||| ||| ||||  ||||| |||||||||||||||||||||||| |||||| | |    
T  6784167 atgttgattttgttttggattgcaagtctcttgttgaacgttttaatttaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagaca 6784266  T
Q  612 attgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 707  Q
     ||| | | |||| |||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||  ||||||| |||||||||||||||||||    
T  6784267 gttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgcttatgaattaactagggtagctccatctca 6784362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 503 - 692
Target Start/End: Original strand, 20639470 - 20639659
Alignment:
Q  503 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 602  Q
    |||||||  |||||||||||| |||||||| ||||| |  ||| || |  ||| ||||||| ||||  |||||||||||||||||||||||||||||| |    
T  20639470 attatgacaatgttgattttgttttggattccaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtattattcaggc 20639569  T
Q  603 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctag 692  Q
    |||||   | ||| | | ||||||||||| ||||||| |||| |||||||||||||  ||||  |||| |||| ||| ||||||||||||    
T  20639570 ttgtaggcagttgttcgattgtaattttcagaactctcatgttgagttcaataggaggcaagccaatgaggtcactcatgaattagctag 20639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 519 - 707
Target Start/End: Original strand, 21515101 - 21515287
Alignment:
Q  519 ttttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgatt 618  Q
    ||||| |||||||| |||||||  ||| || || ||| ||||||| ||||  ||||| |||||||||||||||||| |||||  |||||   | ||| |     
T  21515101 ttttgttttggattgcaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtatttttcaggtttgtaggcagttgttc 21515200  T
Q  619 gcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 707  Q
    |  |||||||||| ||||||  ||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||| ||||||||    
T  21515201 gaatgtaattttcagaactc--atgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctca 21515287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 627 - 705
Target Start/End: Complemental strand, 44839964 - 44839886
Alignment:
Q  627 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatct 705  Q
    ||||| ||||||| ||||||||||||||||||  ||||||||||||||||||| ||| |||||||||||||| ||||||    
T  44839964 ttttcagaactctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttagctagggtagccccatct 44839886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 627 - 707
Target Start/End: Complemental strand, 2536589 - 2536509
Alignment:
Q  627 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 707  Q
    ||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||| |||||||| ||||||||| ||||||||    
T  2536589 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagttagggtagccccatctca 2536509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 571 - 650
Target Start/End: Complemental strand, 32989051 - 32988972
Alignment:
Q  571 gatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttatgtcgagtt 650  Q
    ||||| |||||||||||||||||||||||||||||||   | ||| | | |||||| |||| ||||||| ||||||||||    
T  32989051 gatagcagtgaactaggttgtattattcagacttgtaggcagttgttcgattgtaactttcagaactctcatgtcgagtt 32988972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 634 - 705
Target Start/End: Complemental strand, 51080772 - 51080701
Alignment:
Q  634 aactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatct 705  Q
    |||||| |||||||||| |||||||  |||  |||||||||||||| ||||||||| |||||||| ||||||    
T  51080772 aactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatgaattagcgagggtagccccatct 51080701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 707
Target Start/End: Complemental strand, 52823539 - 52823500
Alignment:
Q  668 atggggtcgctcgtgaattagctagggtagctccatctca 707  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  52823539 atggggtcgctcatgaattagttagggtagctccatctca 52823500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 503 - 733
Target Start/End: Original strand, 23820403 - 23820634
Alignment:
Q  503 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 602  Q
    ||||||| |||||| |||||| |||||||| |||||||  ||| |  | |||| ||||||| ||||  ||||||||||||||||||||||| ||||||      
T  23820403 attatgaccatgttaattttgttttggattccaagtctgttgttgtacactttaattcaaacctaggtgatagtagtgaactaggttgtatcattcaggt 23820502  T
Q  603 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 702  Q
    |||||   | ||| ||| ||||||||||| ||||||| || |||||||||||||||  ||||  ||||||||||||| |||||||| |||||||| ||||    
T  23820503 ttgtaggcagttgtttgattgtaattttcagaactctcatatcgagttcaataggaggcaagccaatggggtcgctcatgaattagatagggtagatcca 23820602  T
Q  703 tctcactcta-atcacacatttatgatgatgt 733  Q
    |||||  |||  || |||||||||||||||||    
T  23820603 tctcatgctagctcccacatttatgatgatgt 23820634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 505 - 607
Target Start/End: Complemental strand, 24808980 - 24808878
Alignment:
Q  505 tatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagactt 604  Q
    ||||| ||||||||||||| ||| |||| |||||||  ||| ||||| ||| ||||||| ||||  |||||||||||||||||||||||||||||| |||    
T  24808980 tatgaccatgttgattttgttttagattccaagtctgttgttgatcgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 24808881  T
Q  605 gta 607  Q
    |||    
T  24808880 gta 24808878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 705
Target Start/End: Original strand, 21118399 - 21118476
Alignment:
Q  627 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatct 705  Q
    ||||| ||||||| ||||||||||||||||||  |||| ||||| |||| ||| ||  |||||||||||||| ||||||    
T  21118399 ttttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcactcatg-gttagctagggtagcaccatct 21118476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 503 - 693
Target Start/End: Original strand, 942573 - 942763
Alignment:
Q  503 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 602  Q
    |||||||  |||||||||||| |||||||| |||||||  ||| || |  ||| | ||||| ||||  |||||||||||||||||||||||||||||| |    
T  942573 attatgacaatgttgattttgttttggattccaagtctgttgttgaacattttaagtcaaacctaggtgatagtagtgaactaggttgtattattcaggc 942672  T
Q  603 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagg 693  Q
    |||||   | ||| | | ||||||||||| ||||||| ||||||||||||||||||  ||||  |||||||||||||||||||||||||||    
T  942673 ttgtaggcagttgttcgattgtaattttcagaactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaattagctagg 942763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 627 - 707
Target Start/End: Original strand, 4513076 - 4513156
Alignment:
Q  627 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 707  Q
    ||||| ||||||| ||||||||||||||||||  ||||  ||||||||||||  |||||||||||||||||| ||||||||    
T  4513076 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctaatgaattagctagggtagccccatctca 4513156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 9e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 557 - 707
Target Start/End: Complemental strand, 41197533 - 41197383
Alignment:
Q  557 attcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaatag 656  Q
    ||||||| ||||  ||||| ||||||||||||||||||||| || ||| || | | ||| | | ||||||||||| ||||||||||||||||||||||||    
T  41197533 attcaaacctaggtgatagcagtgaactaggttgtattatttaggcttatagacagttgttcgattgtaattttcagaactcttatgtcgagttcaatag 41197434  T
Q  657 gaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 707  Q
    ||  ||||  ||||||||||||| |||||||||||||||||| ||||||||    
T  41197433 gaggcaagccaatggggtcgctcatgaattagctagggtagccccatctca 41197383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 697
Target Start/End: Complemental strand, 36779623 - 36779439
Alignment:
Q  511 catgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaat 610  Q
    ||||||||||||  |||||||| |||||||| ||| || || ||| ||||||| |||   || |||||||||||||||||||||||| || ||||||       
T  36779623 catgttgattttattttggattccaagtctattgttgaacgttttaattcaaacctaattgagagtagtgaactaggttgtattattaaggcttgtaggc 36779524  T
Q  611 aattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtag 697  Q
    | ||| ||| ||||||  ||| ||||||| ||||||||| ||||||||  ||||  ||| | ||| ||| || ||||||||||||||    
T  36779523 agttgtttggttgtaa--ttcagaactctcatgtcgagtacaataggaggcaagccaatagtgtcactcatggattagctagggtag 36779439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 624 - 707
Target Start/End: Complemental strand, 30376537 - 30376454
Alignment:
Q  624 taattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 707  Q
    ||||||||  |||||||||||||||||||||||||  ||||  ||| ||||||||| ||||||||||| ||||||  |||||||    
T  30376537 taattttcaaaactcttatgtcgagttcaataggaggcaagccaatagggtcgctcatgaattagctacggtagcctcatctca 30376454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 503 - 707
Target Start/End: Complemental strand, 43989488 - 43989285
Alignment:
Q  503 attatgatcatgttgattttgctttggattacaagtctaatgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagac 602  Q
    |||||||  |||||||||||| |||||||| ||||| |  ||| || || ||| ||||||| ||||  ||||| |||||||||||||||||||||||| |    
T  43989488 attatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 43989389  T
Q  603 ttgtaaataattgattgcttgtaattttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctcca 702  Q
    ||| | | ||||| | | |||| |||||  |||| || ||||||||||||||||||  ||||  |||| |||||||| |||||||| ||||||||| |||    
T  43989388 ttgcagacaattgttcgattgt-atttttagaacgctcatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagttagggtagcccca 43989290  T
Q  703 tctca 707  Q
    |||||    
T  43989289 tctca 43989285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 689
Target Start/End: Complemental strand, 19316081 - 19315935
Alignment:
Q  543 tgtagatcgctttcattcaaatctagacgatagtagtgaactaggttgtattattcagacttgtaaataattgattgcttgtaattttctgaactcttat 642  Q
    |||||||| |||| | |||||| |||| ||||||||||| |||||||| ||||| ||  |||||| ||| ||| ||| |   | ||||| ||||||| ||    
T  19316081 tgtagatcactttaagtcaaatgtagatgatagtagtgagctaggttgcattatacatgcttgtagatagttgtttgttaacagttttcagaactctcat 19315982  T
Q  643 gtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagc 689  Q
    ||||||||||||||||  ||||  ||||| |||| || |||||||||    
T  19315981 gtcgagttcaataggaggcaagccaatggagtcgttcatgaattagc 19315935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 641 - 707
Target Start/End: Complemental strand, 43813264 - 43813198
Alignment:
Q  641 atgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagctagggtagctccatctca 707  Q
    |||||||||||||||| | |||||| |||||||||| || |||||||| ||||||||| ||||||||    
T  43813264 atgtcgagttcaatagcagacaagtcaatggggtcgttcatgaattagttagggtagccccatctca 43813198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 689
Target Start/End: Original strand, 1394129 - 1394191
Alignment:
Q  627 ttttctgaactcttatgtcgagttcaataggaaacaagttaatggggtcgctcgtgaattagc 689  Q
    ||||| ||||||| ||||||||||||||||||  |||| ||||||||||| || |||||||||    
T  1394129 ttttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaattagc 1394191  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 679
Target Start/End: Complemental strand, 49407175 - 49407130
Alignment:
Q  634 aactcttatgtcgagttcaataggaaacaagttaatggggtcgctc 679  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||    
T  49407175 aactcttatgtcaagttcaataggaagcaagtaaatagggtcgctc 49407130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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