View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13899_low_10 (Length: 546)
Name: NF13899_low_10
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Original strand, 33585672 - 33586144
Alignment:
| Q |
9 |
aatatagtaagaaaacgaaagccaatatataagagatgtttccaatcattgaatcgtttgggtccttgtatatatgtactgtaacaatcggtgtttgcaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33585672 |
aatatagtaagaaaacgaaagccaatatataagagatgtttccaatcatggaatcgtttgggtccttgtat----gtactgtaacaatcggtgtttgcaa |
33585767 |
T |
|
| Q |
109 |
cttgtaagctcaatgtcaactatcttctatttaactagtttgggtcctatgcatatctcacagtagggcaacgagaaaagaaaagagatttgcacatttg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33585768 |
cttgtaagctcaatgtcaactatcttctatttaactagtttgggtcctatgcatatctcacagtagggcaacgagaaaagaaaagagatttgcacatttg |
33585867 |
T |
|
| Q |
209 |
tgtttaagaaactcaagtaattttttctaggatnnnnnnncaggaatcagttattttgtatacatgaattgtacgtcgatatttgggaggaataacaaaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33585868 |
tgtttaagaaactcaagtaattttttctgggataaaaaaataggaatcagttattttgtatacatgaattgtacgtcgatatttgggtggaataacaaaa |
33585967 |
T |
|
| Q |
309 |
aaggcaaccctcgtgtttcacagtgttctgtcattaatccctctaaaaagaggtggagttgggaggaccaactagagatgtagggttgaaaatttcatca |
408 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33585968 |
aaggcaacccttatgtttcacagtgttctgtcgttaatccctctaaaaagaggtgtagctgggaggaccaactagagatgtagggttgaaaatttcatca |
33586067 |
T |
|
| Q |
409 |
tagccattttatgttaggcttctcagattgatgagttgacctgtcaatactttttaatatattaattaaaacttcac |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33586068 |
tagccattttatgttaggcttctcagattgatgagttgacctgtcaatattttttaatatattaattaaaacttcac |
33586144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 7679108 - 7679080
Alignment:
| Q |
212 |
ttaagaaactcaagtaattttttctagga |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7679108 |
ttaagaaactcaagtaattttttctagga |
7679080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University