View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_11 (Length: 530)
Name: NF13899_low_11
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 15 - 512
Target Start/End: Complemental strand, 10479741 - 10479245
Alignment:
| Q |
15 |
caaaggtcacaaacaggatgataattgttagagatgctagtcgatttcattatttttgcgatgggacctgtacttgtgctgaccactggtaccattttca |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479741 |
caaaggtcacaaacaggatgataattgttagagatgctagtcgatttcattatttttgcgatgggacctgtacttgtgctgaccactggtaccattttca |
10479642 |
T |
|
| Q |
115 |
caagcttaagaatatcaagcatagtctgagaatgcacattcaacatggattacacacatttaaattccaagatgcttaacagaaaacgaattaccttgag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10479641 |
caagcttaagaatatcaagcatagtctgagaatgcacattcaacatggattacacacatttaaattccaagatgcttaacagaaaacgaattaccttgag |
10479542 |
T |
|
| Q |
215 |
taaacagtggcttaatatcagggtttcttatgcaggcatttgctgtaatcgctacatttccacttctggtggatggattgtgtgtcctagggatttgggt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10479541 |
taaacagtggcttaatatcagggtttcttatgcaggcatttgctgtaatcgctaaatttccacttctggtggatgaattgtgtgtcctagggatttgggt |
10479442 |
T |
|
| Q |
315 |
tatgcacagtcacaatccgatgctgttaatcacatcgttggatttgaatttcaagctcggtannnnnnnnnnnnnnnnaaaatcaaaatctgaattcaaa |
414 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10479441 |
tatgcacagtcacaatccgatgctgatagtcacatcgttggatttgaatttcaagctcggta-tttttttttttttttaaaatcaaaatctgaattcaaa |
10479343 |
T |
|
| Q |
415 |
tctagatcgtccgatcttgatcctacaaccaccaatatggatgactttatgactgcatgggattgtgcctgcacgcaacccaactccgtgtcctagtt |
512 |
Q |
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| T |
10479342 |
tctagatcgtccaatcttgatcctacaaccaccaatatggatgactttctgactgcatgggattgtgcctgcacgcaacccaactccgtgtcctagtt |
10479245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 8741104 - 8741456
Alignment:
| Q |
15 |
caaaggtcacaaacaggatgataattgttagagatgctagtcgatttcattatttttgcgatgggacctgtacttgtgctgaccactggtaccattttca |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8741104 |
caaaggtcacaaacaggatgataattgttagagatgctagtcgatttcattatttttgcgatgggacctgtacttgtgctgaccactggtaccattttca |
8741203 |
T |
|
| Q |
115 |
caagcttaagaatatcaagcatagtctgagaatgcacattcaacatggattacacacatttaaattccaagatgcttaacagaaaacgaattaccttgag |
214 |
Q |
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| T |
8741204 |
caagcttaagaatatcaagcatagtctgagaatgcacattcaacatggattacacacatttaaattccaagatgcttaacagaaaacgaattaccttgag |
8741303 |
T |
|
| Q |
215 |
taaacagtggcttaatatcagggtttcttatgcaggcatttgctgtaatcgctacatttccacttctggtggatggattgtgtgtcctagggatttgggt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8741304 |
taaacagtggcttaatatcagggtttcttatgcaggcatttgctgtaatcgctaaatttccacttctggtggatgaattgtgtgtcctagggatttgggt |
8741403 |
T |
|
| Q |
315 |
tatgcacagtcacaatccgatgctgttaatcacatcgttggatttgaatttca |
367 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
8741404 |
tatgcacagtcacaatccgatgctgatagtcacatcgttggatttgaatttca |
8741456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 2859049 - 2858941
Alignment:
| Q |
15 |
caaaggtcacaaacaggatgataattgttagagatgctagtcgatttcattatttttgcgatgggacctgtacttgtgctgaccactggtaccattttca |
114 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| | ||||||||||| |||||||| |
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| T |
2859049 |
caaaggtcacaaacaggttgataattgttagagatgctagtcgatttcatcattttcgtgatgggacctgtacttgtaccgaccactggtagcattttca |
2858950 |
T |
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| Q |
115 |
caagcttaa |
123 |
Q |
| |
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|||| |||| |
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| T |
2858949 |
caagtttaa |
2858941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 2858881 - 2858829
Alignment:
| Q |
117 |
agcttaagaatatcaagcatagtctgagaatgcacattcaacatggattacac |
169 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
2858881 |
agcttaagaatatcaagcatagtctgagaatgtacattcagcatggattacac |
2858829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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