View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_12 (Length: 524)
Name: NF13899_low_12
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 20 - 518
Target Start/End: Original strand, 46622048 - 46622546
Alignment:
| Q |
20 |
atgtgagtgtgggttagaatcaccaaaattgtatgggcaaaacaacatcttaattagttgatgatcatgtaaaacaggccattctttacaccaaactatc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46622048 |
atgtgagtgtgggttagaatcaccaaaattgtatgggcaaaacaacatcttaattagttgatgatcatgtaaaacaggccattctttacaccaaactatc |
46622147 |
T |
|
| Q |
120 |
aacagcagattgtgaaaaaacaagcataagaattgtttagtgtctttttctaaatacaatgaaagtttaaaccttaatctcttaaggtactaaaaggtgg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46622148 |
aacagcagattgtgaaaaaacaagcataagaattgtttagtgccattttctaaatacaatgaaagtttaaacctcaatctcttaaggtactaaaaggtgg |
46622247 |
T |
|
| Q |
220 |
tttactgtcatatattttcctaatcttgaattaattccattgtaatttgtttgatgaacactcaagtttttctcaaccaatatagctacagtgtcatttt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46622248 |
tttactgtcatatattttcctaatcttgaattaattccattgtaatttgtttgatgaacactcaagtttttctcaaccaatatagctacagtgtcatttt |
46622347 |
T |
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| Q |
320 |
tgtttatatatcacaattaaaactaatatttttaaattaaatcattttcaaaatcttacagctttaaaatgtatttgatccttaagaaaatgtatttgat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46622348 |
tgtttatatatcacaattaaaactaatatttttaaattaaatcattttcaaaatcttacagctttaaaatgtatttgatccttaagaaaatgtatttgat |
46622447 |
T |
|
| Q |
420 |
atgcatacatatcttatttgcgtttgtgttcaaaccaattcaaactaaaccgcaacttgataaagaaataaaaattgcagaaaattaaatattcttgga |
518 |
Q |
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| T |
46622448 |
atgcatacatattttatttgcgttcatgttcaaaccaattcaaactaaactgcaacttgataaagaaataaaaactgcagaaaattaaatattgttgga |
46622546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 46627743 - 46627919
Alignment:
| Q |
20 |
atgtgagtgtgggttagaatcaccaaaattgtatgggcaaaacaacatcttaattagttgatgatcatgtaaaacaggccattctttacaccaaactatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |
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| T |
46627743 |
atgtgagtgtgggttagaatcaccaaaattgtatgggcaaaacaacatcttaattagttgatgatcatgtaaaacagatcattcattagaccaaactatc |
46627842 |
T |
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| Q |
120 |
aacagcagattgtgaaaaaacaagcataagaattgtttagtgtctttttctaaatacaatgaaagtttaaaccttaa |
196 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
46627843 |
aacaccagattgtgaaaaaacaagcacaagaattgtttagtgtcattttctaaatacaatgaaagtttaagccttaa |
46627919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 20 - 439
Target Start/End: Complemental strand, 37147109 - 37146701
Alignment:
| Q |
20 |
atgtgagtgtgggttagaatcaccaaaattgtatgggcaaaacaacatcttaattagttgatgatcatgtaaaacaggccattctttacaccaaactatc |
119 |
Q |
| |
|
|||||||||| |||||||||||||| |||| | ||| |||||||||||||||| || |||||| ||||||||||||| |||| | | |||||| | |
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| T |
37147109 |
atgtgagtgttggttagaatcaccacaattttctggacaaaacaacatcttaactaattgatgttcatgtaaaacagattattcctcagaccaaa--act |
37147012 |
T |
|
| Q |
120 |
aacagcagattgtgaaaaaacaagcataagaattgtttagtgtctttttctaaatacaatgaaagtttaaaccttaatctcttaaggtactaaaaggtgg |
219 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| || |||| |||||| | |||||||| ||| |
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| T |
37147011 |
aaca--agattgtgaaaaaacaagcatacgaattgtttattgtcattttctaaatacaatgacagattaagccttaaa--------gcactaaaagatgg |
37146922 |
T |
|
| Q |
220 |
tttactgtcatatattttcctaatcttgaattaattccattgtaatttgtttgatgaacactc-aagtttttctcaaccaatatagctacagtgtcattt |
318 |
Q |
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||| ||||||||||||||| |||| ||||||||| |||||||||||||| | |||||||||| || ||||| ||||||||||||||| || |||||||| |
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| T |
37146921 |
ttt-ctgtcatatattttcttaattttgaattaaatccattgtaatttggtcaatgaacactcgaattttttttcaaccaatatagctgcaatgtcattt |
37146823 |
T |
|
| Q |
319 |
ttgtttatatatcacaattaaaactaatatttttaaattaaatcattttcaaaatcttacagcttt-aaaatgtatttgatccttaagaaaatgtatttg |
417 |
Q |
| |
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||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||| |||||||||| ||||| || ||| |
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| T |
37146822 |
ttgtttacataccacaattaaaactaatatttataaattaaataattttcaaaatcttacagttttaaaaatgtatgtgatccttaaaaaaatctacttg |
37146723 |
T |
|
| Q |
418 |
atatgcatacatatcttatttg |
439 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
37146722 |
atatgcatacatatcttatttg |
37146701 |
T |
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