View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_13 (Length: 507)
Name: NF13899_low_13
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 18219697 - 18220185
Alignment:
| Q |
1 |
atcattagcatcattattttattgtattctgatgaaggtaggtagcataatgattttgcaatgaaaacattcaatcaatgagcactcaatagaataaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18219697 |
atcattagcatcattattttattgtattctgatgaaggtaggtagcataattattttgcaatgaaaacattcaatcaatgagcactcaataaaataaaga |
18219796 |
T |
|
| Q |
101 |
gtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccagctccaaataaatatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18219797 |
gtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccagctccaaataaatatcc |
18219896 |
T |
|
| Q |
201 |
tgcaattcaacagataaaatcattattaaaagctactgttgtctatatgttatttgacctcccaaattcccagtcccaactttactattcatgttaaccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18219897 |
tgcaattcaacagataaaatcattattaaaagctactgttgtctatatgtcatgtgacctcccaaattcccagtcccaactttactattcatgttaaccg |
18219996 |
T |
|
| Q |
301 |
ttagcaatgagctggtactactatgcttcctctcacctgcttagaaacctgggaaccatggtcctcaaaattcaaacttgacatacaagaactaggagta |
400 |
Q |
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| T |
18219997 |
ttagcaatgagctggtactactatgcttcctctcacctgcttagaaacctgggaaccatagtcctcaaaattcaaacttgacatacaagaactaggagta |
18220096 |
T |
|
| Q |
401 |
gtcacaagagccaatgcttcctcttctctttttgatgtgagctccctcatttctctgtttgcagatcaagaaaagtaagcaataactca |
489 |
Q |
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| T |
18220097 |
gtcacaagagccaatgcttcctcttctctttttgatgtgagctccctcatttctctgtttgcagatcaagaaaagtaagcaataactca |
18220185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 43011523 - 43011873
Alignment:
| Q |
1 |
atcattagcatcattattttattgtattctgatgaaggtaggtagcataatgattttgcaatgaaaacattcaatcaatgagca-ctcaatagaataaag |
99 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||||||||| |||| ||||||| ||||||| |
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| T |
43011523 |
atcatcagcatcattattttattgtattctgatgaatgtaggtagcataattattttgcattgaaaaaattcaatcaataagcagctcaataaaataaag |
43011622 |
T |
|
| Q |
100 |
agtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccagctccaaataaatatc |
199 |
Q |
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| T |
43011623 |
agtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccagctccaaataaatatc |
43011722 |
T |
|
| Q |
200 |
ctgcaattcaacagataaaatcattattaaaagctactgttgtctatatgttatttgacctcccaaattcccagtcccaactttactattcatgttaacc |
299 |
Q |
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||| ||| |||||||| ||| |||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |
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| T |
43011723 |
ctgaaatataacagatagaataattattaaaaactactgttgtctatatgacatgtgacctcccaaattcccagt-----ttttactattcatgttaatt |
43011817 |
T |
|
| Q |
300 |
gttagcaatgagctggtactactatgcttcctctcacctgcttagaaacctgggaa |
355 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
43011818 |
gttagcaatgagctgggactactatgcttcccctcacctgcttagaaacctgggaa |
43011873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 477
Target Start/End: Original strand, 43011907 - 43011953
Alignment:
| Q |
431 |
tttgatgtgagctccctcatttctctgtttgcagatcaagaaaagta |
477 |
Q |
| |
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|||||| | |||||||||||||| ||||||||||||||||||||||| |
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| T |
43011907 |
tttgattttagctccctcatttcactgtttgcagatcaagaaaagta |
43011953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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