View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13899_low_14 (Length: 492)

Name: NF13899_low_14
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13899_low_14
NF13899_low_14
[»] chr5 (19 HSPs)
chr5 (45-486)||(30060548-30060989)
chr5 (45-486)||(30749822-30750263)
chr5 (20-483)||(30400228-30400691)
chr5 (20-439)||(30712958-30713377)
chr5 (20-483)||(29872328-29872791)
chr5 (20-439)||(30435970-30436389)
chr5 (20-483)||(29853465-29853928)
chr5 (20-430)||(30483558-30483965)
chr5 (20-439)||(30338058-30338474)
chr5 (20-480)||(30206676-30207136)
chr5 (20-480)||(30241873-30242324)
chr5 (281-439)||(30676821-30676979)
chr5 (69-348)||(17983110-17983389)
chr5 (20-162)||(30676978-30677120)
chr5 (21-436)||(30475530-30475945)
chr5 (69-435)||(30521162-30521528)
chr5 (69-435)||(30561502-30561868)
chr5 (47-167)||(30330936-30331056)
chr5 (378-434)||(17983410-17983466)
[»] chr7 (1 HSPs)
chr7 (20-477)||(26707489-26707943)
[»] chr4 (3 HSPs)
chr4 (47-477)||(20296077-20296507)
chr4 (20-480)||(52352112-52352573)
chr4 (69-438)||(13616800-13617168)
[»] chr1 (2 HSPs)
chr1 (69-480)||(7581211-7581622)
chr1 (69-480)||(7099624-7100035)
[»] chr3 (1 HSPs)
chr3 (68-228)||(25293668-25293828)


Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 45 - 486
Target Start/End: Original strand, 30060548 - 30060989
Alignment:
Q  45 ccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattacccctag 144  Q
    |||||| |||||||||| || | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  30060548 ccagaaaattcatccatttttctatcttgaaagaatgatttttggtacaattcatcccacaccatgatgccaacatcttcaacctccgtagtacccctag 30060647  T
Q  145 atgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatagcacaaaaagagaaacattgttttag 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  30060648 atgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttag 30060747  T
Q  245 ggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattcc 344  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060748 ggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattcc 30060847  T
Q  345 ttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatctcctttcctattgccacgagat 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30060848 ttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattgcatttctttactatctcctttcctattgccacgagat 30060947  T
Q  445 cagcacgctcttctttgtaatgtccaaatgcatattcttcga 486  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  30060948 cagcacgctcttctttgtgatgtccaaatgcatattgttcga 30060989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 45 - 486
Target Start/End: Original strand, 30749822 - 30750263
Alignment:
Q  45 ccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattacccctag 144  Q
    |||||| |||||||||| || | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30749822 ccagaaaattcatccatttttctatcttgaaagaatgatttttgatacaattcatcccaaaccatgatgccaacatcttcaacctccatattacccctag 30749921  T
Q  145 atgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatagcacaaaaagagaaacattgttttag 244  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  30749922 atgaaatcaatccattagccatccaaagccaaatcaatttttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttag 30750021  T
Q  245 ggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattcc 344  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30750022 ggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactatctttaattttaagccattcc 30750121  T
Q  345 ttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatctcctttcctattgccacgagat 444  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750122 ttttcatctttccttgagttcattaaacttcccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttcctattgccacgagat 30750221  T
Q  445 cagcacgctcttctttgtaatgtccaaatgcatattcttcga 486  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  30750222 cagcacgctcttctttgtaatgtccaaatgcatattgttcga 30750263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 483
Target Start/End: Original strand, 30400228 - 30400691
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||| || || ||| |||| |||||| |||||||||| ||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30400228 atcatgcatcttgaatgaaatgttgccagaaaattcatccatttttttgtcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 30400327  T
Q  120 tcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatag 219  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||| || | ||| ||  |||| |||||||||||||    
T  30400328 tcttcaacctccgtattaccccaagatgaaatcaatccattagccatccaaagctgaatcaattcttctttcaagatttccctatccttgggaaatatag 30400427  T
Q  220 cacaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttc 319  Q
    ||||||||||||||||||| |||||||  |  | |||||| ||||||||||||||||||| | |||||||  ||||||| |||| |||| ||||||| ||    
T  30400428 cacaaaaagagaaacattgctttagggtcggtgttaaataaaagtaactcaacctcaaagaacgcaaaatataattttcttctggtaaagcccaaagctc 30400527  T
Q  320 actgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttact 419  Q
    | |||||||||| | |||||||||||||||  | ||||||||| |||| |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  30400528 agtgtctttaatatcaagccattccttttctccattccttgagctcatcaaacctcccaatgcttttgctgcaagaggcaatccattacatttctttact 30400627  T
Q  420 atctcctttcctattgccacgagatcagcacgctcttctttgtaatgtccaaatgcatattctt 483  Q
    ||||||||||||||||| || || || |||||||||||| | |||||||| |||||||||||||    
T  30400628 atctcctttcctattgctacaagttctgcacgctcttctctataatgtcccaatgcatattctt 30400691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 439
Target Start/End: Complemental strand, 30713377 - 30712958
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||| | ||||||    
T  30713377 atcatgcattttaaaagaaatgtttccagaatattcatccatcttgcaatcttggaagaatgatttttggtacaattccttccaaaccatgtttccaaca 30713278  T
Q  120 tcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatag 219  Q
    |||||||| |||  ||||||| |||||||||| |||||||||||||||||||| | |||||||||||| |||||||| ||| |||| |||||||||||||    
T  30713277 tcttcaacgtccaaattacccatagatgaaataaatccattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaatatag 30713178  T
Q  220 cacaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttc 319  Q
    ||||||||||||||||||| ||||||| ||  | |||||| |||||||||| |||||||||||||||||| |||||||| | || |||| ||||||| ||    
T  30713177 cacaaaaagagaaacattgctttagggttggtgataaataaaagtaactcagcctcaaagcaggcaaaatagaattttcttgtggtaaagcccaaagctc 30713078  T
Q  320 actgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttact 419  Q
    |||||||||||| | ||||||||| ||||| || ||||||||| |||| ||||  ||||||| |||||||||||| ||||||||||||||||||||| ||    
T  30713077 actgtctttaatatcaagccattcattttcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagtggcaatccattacatttctttgct 30712978  T
Q  420 atctcctttcctattgccac 439  Q
    ||||||||||||||| ||||    
T  30712977 atctcctttcctatttccac 30712958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 483
Target Start/End: Original strand, 29872328 - 29872791
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||| || |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| | ||||||    
T  29872328 atcatgcatcttgaaagaaatgtctccagaatattcatccatcttgccatcttgaaagaatgatttttggtacaattccttccaaaccatgtttccaaca 29872427  T
Q  120 tcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatag 219  Q
    |||||||| |||  ||||||| |||||||||| ||| ||||||||||||||||   |||||||||||| || ||||| | | |||| |||||||||||||    
T  29872428 tcttcaacgtccaaattacccatagatgaaataaattcattagccatccaaagttgaatcaattcttctttcaggatttttctatccttgggaaatatag 29872527  T
Q  220 cacaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttc 319  Q
    | ||||||||||||||||| ||||||| ||  | |||||| ||||||||||||||||||||| ||||||| |||||||| |  |||||| ||||||| ||    
T  29872528 cgcaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgcgataaagcccaaagctc 29872627  T
Q  320 actgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttact 419  Q
    |||||| ||||| | ||||||||||||||| || ||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||     
T  29872628 actgtccttaatatcaagccattccttttcttcattccttgagctcatcaaacctcccaatgcttttgctgcaagaggcaatccattacatttctttaca 29872727  T
Q  420 atctcctttcctattgccacgagatcagcacgctcttctttgtaatgtccaaatgcatattctt 483  Q
    ||||||||||||||| |||  || |  | | |||||||| |||||| |||||||||||||||||    
T  29872728 atctcctttcctatttccataagctttgtatgctcttctctgtaatatccaaatgcatattctt 29872791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 30435970 - 30436389
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||| || |||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||  | ||||||    
T  30435970 atcatgcatcttgaaagaaatgtctccaaaatattcatccatcttgctatcttgaaagaatgatttttggtacaattccttccaaaccatttttccaaca 30436069  T
Q  120 tcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatag 219  Q
    |||||||| |||  ||||||| |||||||||| ||| |||||||||||||||| | |||||||||||| |||||||| ||| |||| |||||||||||||    
T  30436070 tcttcaacgtccaaattacccatagatgaaataaattcattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaatatag 30436169  T
Q  220 cacaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttc 319  Q
    ||||||||||||||||||| ||||||| ||  | |||||| ||||||||||| |||||||| |||||||| |||||||| | || |||| ||||||| ||    
T  30436170 cacaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaatctcaaagcgggcaaaatagaattttcttgtggtaaagcccaaagctc 30436269  T
Q  320 actgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttact 419  Q
    |||||||||||| | ||||||||||||||| || ||||||||| |||| ||||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  30436270 actgtctttaatatcaagccattccttttcttcattccttgagctcatcaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttact 30436369  T
Q  420 atctcctttcctattgccac 439  Q
    ||||||||||| ||| ||||    
T  30436370 atctcctttccaatttccac 30436389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 483
Target Start/End: Original strand, 29853465 - 29853928
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||| || ||| || ||| |||||| |||||||||||||||  ||||||||||||||| |||||||||||||| | |||||||||  | ||||||    
T  29853465 atcatgcatcttgaaaaaaatgtctccagagtattcatccatcttgatatcttgaaagaatgacttttggtacaattccttccaaaccatatttccaaca 29853564  T
Q  120 tcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatag 219  Q
    |||||||| |||  ||||||| |||||||||| ||||||||||||||||||||   |||||||||||| || ||||| |||  ||| |||||||||||||    
T  29853565 tcttcaacgtccaaattacccttagatgaaataaatccattagccatccaaagttgaatcaattcttctttcaggatttctccatccttgggaaatatag 29853664  T
Q  220 cacaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttc 319  Q
    | ||||| ||||||||||||||||||| ||  | |||||| ||||||||||||||||||||| ||||||| |||||||| | || |||| ||||||| ||    
T  29853665 cgcaaaaggagaaacattgttttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgtggtaaagcccaaagctc 29853764  T
Q  320 actgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttact 419  Q
    |||||||||||| | ||||||||||||||| || ||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||     
T  29853765 actgtctttaatatcaagccattccttttcttcattccttgagctcatcaaacctcccaatgtttttgctgcaagaggcaatccattacatttctttaca 29853864  T
Q  420 atctcctttcctattgccacgagatcagcacgctcttctttgtaatgtccaaatgcatattctt 483  Q
    ||||||||||||||| |||| || |  | | |||||||| || ||| |||||||||||||||||    
T  29853865 atctcctttcctatttccacaagctttgtatgctcttctctgaaatatccaaatgcatattctt 29853928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 430
Target Start/End: Original strand, 30483558 - 30483965
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||| || |||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||  ||||||||| | |||||||||| | ||||||    
T  30483558 atcatgcatcttgaaagaaatgtctccagaatattcatccatcttgctatcttgaaagaacgattttctgtacaattccttccaaaccatgtttccaaca 30483657  T
Q  120 tcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatag 219  Q
    |||||||||||   ||| | | |   || ||| |||||||||||||||||||||  ||||||||||||||| ||||| ||| ||||||||||||||||||    
T  30483658 tcttcaacctctaaattcctctt---tgcaataaatccattagccatccaaagctgaatcaattcttccttcaggatttctctatctttgggaaatatag 30483754  T
Q  220 cacaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttc 319  Q
    ||||||| ||||||||||| ||||||| ||  | |||||| ||||||||||||||||||||||| ||||| || ||||||| || |||||||||||| ||    
T  30483755 cacaaaaggagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctc 30483854  T
Q  320 actgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttact 419  Q
    |||||||||||| | ||||||||||||||| || ||| |||||  ||||||||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  30483855 actgtctttaatatcaagccattccttttcttcattcattgagaccattaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttact 30483954  T
Q  420 atctcctttcc 430  Q
    |||||||||||    
T  30483955 atctcctttcc 30483965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 439
Target Start/End: Complemental strand, 30338474 - 30338058
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||| || |||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| | |||||||||| | ||||||    
T  30338474 atcatgcatcttgaaagaaatgtctccagaatattcatccatcttgctatcttgaaagaacgattttttgtacaattccttccaaaccatgtttccaaca 30338375  T
Q  120 tcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatag 219  Q
    |||||||||||   ||| | | |   || ||| ||||||||||||||||||||   ||||||||||||||| ||||| ||| ||||||||||||||||||    
T  30338374 tcttcaacctctaaattcctctt---tgcaataaatccattagccatccaaagttgaatcaattcttccttcaggatttctctatctttgggaaatatag 30338278  T
Q  220 cacaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttc 319  Q
    ||||||| ||||||||||| ||||||| ||  | |||||| ||||||||||| ||||||||||| ||||| || ||||||| || |||||||||||| ||    
T  30338277 cacaaaaggagaaacattgctttagggttggtgttaaataaaagtaactcaaactcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctc 30338178  T
Q  320 actgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttact 419  Q
    |||||||||||| | ||||||||||||||| || ||| |||||  ||||||||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  30338177 actgtctttaatatcaagccattccttttcttcattcattgagaccattaaaccccccaatgcttttgctgcaagaggcaatccattacatttctttact 30338078  T
Q  420 atctcctttcctattgccac 439  Q
    ||||||||||| ||| ||||    
T  30338077 atctcctttccaatttccac 30338058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 20 - 480
Target Start/End: Original strand, 30206676 - 30207136
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||| || |||||| ||| |||||||   |  |||||||||   ||||||||||| ||||||||| ||||||||| |||||||||| ||||||||    
T  30206676 atcatgcatcttgaaagaaatgtctccagaaccgttgtccatcttgatgtcttgaaagaaagatttttggcacaattcattccaaaccatgctgccaaca 30206775  T
Q  120 tcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatag 219  Q
    |||||||||||| ||||  |||||||| |||| ||| ||||||||||||||||   ||||||||||||| | | ||  ||||||||||||||||| ||||    
T  30206776 tcttcaacctccatattttccctagataaaataaattcattagccatccaaagatgaatcaattcttccctcacgaattctgtatctttgggaaacatag 30206875  T
Q  220 cacaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttc 319  Q
    ||||||||| ||||||  | |||| || ||  | |||||  ||||| ||||||||||||||||| |||||  |||| |||| || |||| ||||||||||    
T  30206876 cacaaaaagcgaaacaccgctttaaggttggagttaaatgaaagtagctcaacctcaaagcaggtaaaatataattctcatgtggtaaagcccaaagttc 30206975  T
Q  320 actgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttact 419  Q
    ||| |||||||||| ||||||||| ||||| || ||||||||  |||||| || |||||||| || |||||||||||||||||||| |||||||||||||    
T  30206976 actctctttaatttcaagccattctttttcttcattccttgaactcattagacctcccaatgcttgtgctgcaagaggcaatccatcacatttctttact 30207075  T
Q  420 atctcctttcctattgccacgagatcagcacgctcttctttgtaatgtccaaatgcatatt 480  Q
    ||||||||||||||| |||| || || |||||||||||| | |  ||||||||||||||||    
T  30207076 atctcctttcctatttccacaagctctgcacgctcttctctattttgtccaaatgcatatt 30207136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 20 - 480
Target Start/End: Complemental strand, 30242324 - 30241873
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||| || |||||| ||| |||||||||||||||||| ||||  |||||||| |||||||||||||||||||| | |||||||||| | ||||||    
T  30242324 atcatgcatcttgaaagaaatgtctccagaatattcatccattttgctgtcttgaaaaaatgatttttggtacaattccttccaaaccatgtttccaaca 30242225  T
Q  120 tcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatag 219  Q
    |||||||||||   ||| || ||   || ||| |||||||||||||| || |||  ||||||||||||||| ||||| |||  |||||||||||||||||    
T  30242224 tcttcaacctcta-atttcctctt--tgcaataaatccattagccattcagagctgaatcaattcttccttcaggatttctccatctttgggaaatatag 30242128  T
Q  220 cacaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttc 319  Q
    ||||||||||||||||||||||||| | ||  | |||||| |||||||||||||||||||||||||||||      ||| | ||  ||  ||||||| ||    
T  30242127 cacaaaaagagaaacattgttttagagttggtgttaaataaaagtaactcaacctcaaagcaggcaaaat------ttcttgtggcaaggcccaaagctc 30242034  T
Q  320 actgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttact 419  Q
     || |||||||||| ||||||||||| ||| || ||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||     
T  30242033 gctatctttaatttcaagccattcctcttcttcattccttgagctcattaaacctcccaatgctttcgctgcaagaggcaatccattacatttctttaca 30241934  T
Q  420 atctcctttcctattgccacgagatcagcacgctcttctttgtaatgtccaaatgcatatt 480  Q
    |||||||||||||||  ||| || |  | || ||||||| | |||||||||||||||||||    
T  30241933 atctcctttcctattttcacaagctttgtactctcttctctataatgtccaaatgcatatt 30241873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 281 - 439
Target Start/End: Complemental strand, 30676979 - 30676821
Alignment:
Q  281 aggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaat 380  Q
    ||||||||| |||||||  | || |||| ||||||| |||||||||||||| | |||||||||||| || || ||||||||| |||| ||||  ||||||    
T  30676979 aggcaaaatagaatttttttgtggtaaagcccaaagctcactgtctttaatatcaagccattccttctcttcattccttgagctcatcaaaccccccaat 30676880  T
Q  381 gattttgctgcaagaggcaatccattacatttctttactatctcctttcctattgccac 439  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  30676879 gcttttgctgcaagaggcaatccattacatttctttactatctcctttccaatttccac 30676821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 69 - 348
Target Start/End: Original strand, 17983110 - 17983389
Alignment:
Q  69 tcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattacccctagatgaaatcaatccattagccatcc 168  Q
    ||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||  |||    |||||||| || |||  |||||||||||    
T  17983110 tcttgaaagaaagatttttggtacaattcattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgagataaatttattagccatcc 17983209  T
Q  169 aaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaatataagtaact 268  Q
    ||||   ||| | |||||| || | ||| ||||  ||||||||||||||||||||||||| |||||||||||||| || ||  | |||||  ||||| ||    
T  17983210 aaagatgaattagttcttctttcatgatttctgcttctttgggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagct 17983309  T
Q  269 caacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattcctttt 348  Q
    |||||| | ||| || ||||| ||||| ||||  | |||| |||| || || || |||||||||| || |||||||||||    
T  17983310 caaccttagagctgggaaaatagaattctcatgcggtaaagcccagagctcgctctctttaatttcaaaccattcctttt 17983389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 30677120 - 30676978
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||| || | ||||||    
T  30677120 atcatgcatcttaaaagaaatgtctccagaatattcatccatctttctatcttgaaagaatgatttttggtacaattccttccaaaccgtgtttccaaca 30677021  T
Q  120 tcttcaacctccgtattacccctagatgaaatcaatccattag 162  Q
    || ||||| |||  ||||||| |||||||||| ||||||||||    
T  30677020 tcatcaacgtccaaattacccatagatgaaataaatccattag 30676978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 21 - 436
Target Start/End: Original strand, 30475530 - 30475945
Alignment:
Q  21 tcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacat 120  Q
    |||||||| || |||| | ||| ||| ||||| ||||| ||||||   ||||| ||||||||||||||| ||| ||| | ||||| |||  |||||| |     
T  30475530 tcatgcatcttgaaagtaatgtctcctgaataatcatctatcttgatgtcttggaagaatgatttttggcacagttccttccaaatcatattgccaaaaa 30475629  T
Q  121 cttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatagc 220  Q
     ||| || |||  |||| || | ||  |||| ||||||||  ||||||| ||   |||||| ||||||||||  || ||  |||||||||||||||| ||    
T  30475630 attctacatccaaattagcctttgagaaaataaatccattgcccatccatagatgaatcaaatcttcctttacaatttccatatctttgggaaatatcgc 30475729  T
Q  221 acaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttca 320  Q
    ||||||||  |||||  | |||| ||  |  | |||||  ||||| || |||||||| || |||||||||||||| |||| || |||   ||| || | |    
T  30475730 acaaaaagcaaaacaccgctttaaggtcggtgttaaatgaaagtagcttaacctcaaggctggcaaaatggaattctcatatggtaaggtccagagatta 30475829  T
Q  321 ctgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttacta 420  Q
    ||||||||||||| ||||||||| ||||||||  ||||||||  ||||| || |||||||| || ||||||||||||||||||   ||| ||||||||||    
T  30475830 ctgtctttaatttcaagccattcattttcatcactccttgagcgcattagacctcccaatgcttgtgctgcaagaggcaatcctccacacttctttacta 30475929  T
Q  421 tctcctttcctattgc 436  Q
    || |||| ||||||||    
T  30475930 tcgccttacctattgc 30475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 69 - 435
Target Start/End: Complemental strand, 30521528 - 30521162
Alignment:
Q  69 tcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattacccctagatgaaatcaatccattagccatcc 168  Q
    ||||| || ||||| |||||| ||||||||| ||||| |||  | ||||||||||| |||||   |||  |||| ||||| || ||||| || || ||||    
T  30521528 tcttggaaaaatgacttttggcacaattcattccaaatcatatttccaacatcttctacctctaaattttcccttgatgatataaatccgttggcgatcc 30521429  T
Q  169 aaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaatataagtaact 268  Q
    | ||   ||| || ||| |||| | ||| ||| ||||||||||||| || |||||||||| |||||||||||||| || ||    |||||  ||||| ||    
T  30521428 agagatgaattaaatctcccttcatgatttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagct 30521329  T
Q  269 caacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcatt 368  Q
    |||||| |||||||||||||| ||||| ||||  | ||||  |||||     || |||||||||| ||||||||| |||||  |  ||||||||  ||||    
T  30521328 caaccttaaagcaggcaaaatagaattctcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacatt 30521229  T
Q  369 aaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatctcctttcctattg 435  Q
    |  | |||||||| || ||||||||||||||||||   ||| |||||||||||||| ||||||||||    
T  30521228 aggcctcccaatgcttgtgctgcaagaggcaatcccccacacttctttactatctcttttcctattg 30521162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 69 - 435
Target Start/End: Complemental strand, 30561868 - 30561502
Alignment:
Q  69 tcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattacccctagatgaaatcaatccattagccatcc 168  Q
    ||||| || ||||| |||||| ||||||||| ||||| |||  | ||||||||||| |||||   |||  |||| ||||| || ||||| || || ||||    
T  30561868 tcttggaaaaatgacttttggcacaattcattccaaatcatatttccaacatcttctacctctaaattttcccttgatgatataaatccgttggcgatcc 30561769  T
Q  169 aaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaatataagtaact 268  Q
    | ||   ||| || ||| |||| | ||| ||| ||||||||||||| || |||||||||| |||||||||||||| || ||    |||||  ||||| ||    
T  30561768 agagatgaattaaatctcccttcatgatttctatatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagct 30561669  T
Q  269 caacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcatt 368  Q
    |||||| |||||||||||||| ||||| ||||  | ||||  |||||     || |||||||||| ||||||||| |||||  |  ||||||||  ||||    
T  30561668 caaccttaaagcaggcaaaatagaattctcattcggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacatt 30561569  T
Q  369 aaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatctcctttcctattg 435  Q
    |  | |||||||| || ||||||||||||||||||   ||| |||||||||||||| ||||||||||    
T  30561568 aggcctcccaatgcttgtgctgcaagaggcaatcccccacacttctttactatctcttttcctattg 30561502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 30331056 - 30330936
Alignment:
Q  47 agaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattacccctagat 146  Q
    |||||||||||  ||||||   |||| |||||||| ||||||| ||||| ||| |||| ||||| |  ||||||||   ||||||  ||||| |||||||    
T  30331056 agaatattcatagatcttgatgtcttcaaagaatggtttttggcacaatccattccaagccatgctagcaacatctaggacctccaaattacgcctagat 30330957  T
Q  147 gaaatcaatccattagccatc 167  Q
    ||||| ||||||| |||||||    
T  30330956 gaaataaatccatcagccatc 30330936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 17983410 - 17983466
Alignment:
Q  378 aatgattttgctgcaagaggcaatccattacatttctttactatctcctttcctatt 434  Q
    |||| |||||||||||||||||||||   ||| || |||||||||||||| ||||||    
T  17983410 aatgcttttgctgcaagaggcaatcctccacacttttttactatctccttgcctatt 17983466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 477
Target Start/End: Original strand, 26707489 - 26707943
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||| || |||||| ||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| | |||||||||| | ||||||    
T  26707489 atcatgcatcttgaaagaaatgtctccagaatattcacccatcttacagtcttgaaagaatgatttttggtacaattccttccaaaccatgtttccaaca 26707588  T
Q  120 tcttcaacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatag 219  Q
    |||||||||||   ||| | | |   || ||| ||||||||||||||||||||   ||||||||||||||| | ||| ||| ||||||||||||||||||    
T  26707589 tcttcaacctctaaattcctctt---tgcaataaatccattagccatccaaagttgaatcaattcttccttcaagatttctctatctttgggaaatatag 26707685  T
Q  220 cacaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttc 319  Q
    ||||||||||||||||||| ||||||| ||  | |||||| ||||||||||||||||||||||||||||| || ||||| | || |||||||||||| ||    
T  26707686 cacaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaggcaaaatagatttttcttgtggtaaatcccaaagctc 26707785  T
Q  320 actgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttact 419  Q
    |||||||||||| | ||||||||||||||| || ||| |||||  |||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||    
T  26707786 actgtctttaatatcaagccattccttttcttcattcattgagaacattaaacctcccaatgcttttgctgcaagaggtaatccattacatttttttact 26707885  T
Q  420 atctcctttcctattgccacgagatcagcacgctcttctttgtaatgtccaaatgcat 477  Q
    ||||||||||||||| |||| || |  | | |||||||| ||||||||| ||||||||    
T  26707886 atctcctttcctatttccacaagctttgtatgctcttctctgtaatgtctaaatgcat 26707943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 47 - 477
Target Start/End: Complemental strand, 20296507 - 20296077
Alignment:
Q  47 agaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattacccctagat 146  Q
    |||||||||||| || |||   ||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||| |||  ||||||| |||||    
T  20296507 agaatattcatctattttgatttcttgaaagaatgatttttggtacaattccttccaaaccatgtttccaacatcttcaacgtccaaattacccatagat 20296408  T
Q  147 gaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatagcacaaaaagagaaacattgttttaggg 246  Q
    ||||| |||||||||||||||||||||  |||||||||||| || | ||| ||| |||| || ||||||||||||||||||||||||||||| ||||| |    
T  20296407 gaaattaatccattagccatccaaagctgaatcaattcttctttcaagatttctctatccttaggaaatatagcacaaaaagagaaacattgctttagag 20296308  T
Q  247 ctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattcctt 346  Q
     ||  | |||||| |||||||||| |||||||||||||||||| || ||||| | || |||| ||||||| ||| |||||||||| | | ||||||||||    
T  20296307 ttggtgttaaataaaagtaactcagcctcaaagcaggcaaaatagatttttcttgtggtaaagcccaaaggtcattgtctttaatatcacgccattcctt 20296208  T
Q  347 ttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatctcctttcctattgccacgagatca 446  Q
    ||| || ||| |||||  |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |      
T  20296207 ttcttcattcattgagaccattaaacctcccaatgcttttgctgcaagaggcaatccattacatttctttactatctcctttcctatttccacaagcttt 20296108  T
Q  447 gcacgctcttctttgtaatgtccaaatgcat 477  Q
    | | |||||||| ||||||||| ||||||||    
T  20296107 gtatgctcttctctgtaatgtctaaatgcat 20296077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 480
Target Start/End: Original strand, 52352112 - 52352573
Alignment:
Q  20 atcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaaca 119  Q
    ||||||||| || |||||| ||| |||  |||| ||||  ||||||   |||||||||||||| |||||||||||||||| ||||| |||  |||||||     
T  52352112 atcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaattcattccaaatcatattgccaact 52352211  T
Q  120 tctt-caacctccgtattacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatctttgggaaatata 218  Q
    |||| | ||||||  |||  || |||| ||||| |||||||| |||||||| ||   |||||| || || |||||||| || |||||||||||||||||     
T  52352212 tctttctacctccaaattttccttagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatg 52352311  T
Q  219 gcacaaaaagagaaacattgttttagggctgccggtaaatataagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagtt 318  Q
    ||||| ||||||||||||||||||| || || || |||||  || |||||||||||||| ||||||||||| ||||| ||||||||||||  |||||| |    
T  52352312 gcacagaaagagaaacattgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaagct 52352411  T
Q  319 cactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgattttgctgcaagaggcaatccattacatttctttac 418  Q
      || |||||||||| || ||||||||||||  | || ||||||  ||||| || ||| |||| || ||| ||||||||||||||   ||| ||||||||    
T  52352412 tgctctctttaatttcaacccattccttttctccatttcttgagcgcattagacctcctaatgcttgtgcagcaagaggcaatcccccacacttctttac 52352511  T
Q  419 tatctcctttcctattgccacgagatcagcacgctcttctttgtaatgtccaaatgcatatt 480  Q
    |||| | || ||||||||||| || ||  | || |||||| | | |||| ||||||||||||    
T  52352512 tatcgctttgcctattgccactagctcttctcgttcttctatatcatgttcaaatgcatatt 52352573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 69 - 438
Target Start/End: Original strand, 13616800 - 13617168
Alignment:
Q  69 tcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattacccctagatgaaatcaatccattagccatcc 168  Q
    |||||||| || ||||||||||||||||||| ||||| |||| | ||||||||||||||||||   ||     || ||||||| ||| ||||||||||||    
T  13616800 tcttgaaaaaaagatttttggtacaattcattccaaatcatgtttccaacatcttcaacctccaatttttttttacatgaaataaattcattagccatcc 13616899  T
Q  169 aaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaatataagtaact 268  Q
    ||||   ||||||||||||||||  ||| | ||||||||| ||||||| | |||| |||| ||| |||||||| | || || || |||||  ||||||||    
T  13616900 aaagatgaatcaattcttcctttgtgatttttgtatctttaggaaatacaacacagaaagcgaatcattgtttaaaggttggcgataaat-gaagtaact 13616998  T
Q  269 caacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcatt 368  Q
    || ||||||| |||| ||||| ||||| ||||    |||||||||||| || || ||| |||||| |  ||||||||||||  |  |||| ||||  |||    
T  13616999 cagcctcaaatcaggaaaaatagaattctcataccgtaaatcccaaagctcgctctctctaatttcacaccattccttttctccactcctcgagtgtatt 13617098  T
Q  369 aaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatctcctttcctattgcca 438  Q
    | |   ||||||| || | ||||||||||||||||   ||| || || ||||||||||||||||||||||    
T  13617099 agagaccccaatgcttgtcctgcaagaggcaatcctccacactttttaactatctcctttcctattgcca 13617168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 69 - 480
Target Start/End: Complemental strand, 7581622 - 7581211
Alignment:
Q  69 tcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattacccctagatgaaatcaatccattagccatcc 168  Q
    ||||||||||| || |||||| ||||||||| ||||| |||| ||||||||||||||||||||  |||    ||||||||||| ||| ||||||||||||    
T  7581622 tcttgaaagaaagacttttggcacaattcattccaaatcatgttgccaacatcttcaacctccaaattttttctagatgaaataaattcattagccatcc 7581523  T
Q  169 aaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaatataagtaact 268  Q
    ||||   ||||||||||||||| | ||| | ||||||||| ||||||||||||||||||| |||||||||||||| || ||  | |||||  ||||| ||    
T  7581522 aaagatgaatcaattcttccttcatgatttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagct 7581423  T
Q  269 caacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcatt 368  Q
    ||| |||| ||| |||||| | ||||| ||||  | |||||||||||| || || |||||||||| || |||||||||||| ||  ||||||||| ||||    
T  7581422 caatctcagagctggcaaagtagaattctcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcatt 7581323  T
Q  369 aaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatctcctttcctattgccacgagatcagcacgctcttctttgtaatgtc 468  Q
    | ||  ||||||| || ||||||||||||||||||   |||||| |||||||||||||| ||||||||||| || || |||| ||||||| | | |||||    
T  7581322 agacaccccaatgcttgtgctgcaagaggcaatcccgcacatttttttactatctccttgcctattgccacaagctctgcactctcttctctatcatgtc 7581223  T
Q  469 caaatgcatatt 480  Q
    ||||||||||||    
T  7581222 caaatgcatatt 7581211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 69 - 480
Target Start/End: Original strand, 7099624 - 7100035
Alignment:
Q  69 tcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattacccctagatgaaatcaatccattagccatcc 168  Q
    ||||||||||| ||||||||||||||||||| ||||| |||| | ||||||||||||||||||  |||    ||||||||||| ||||||||||||||||    
T  7099624 tcttgaaagaaagatttttggtacaattcattccaaatcatgtttccaacatcttcaacctccaaattttttctagatgaaataaatccattagccatcc 7099723  T
Q  169 aaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaatataagtaact 268  Q
    ||||   ||||||||||||||| | ||| | |||||||||| |||||||||||||||||| |||||||||||||| || ||  | |||||  ||||| ||    
T  7099724 aaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagct 7099823  T
Q  269 caacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcatt 368  Q
    |||||||||||| |||||||| ||||| || |  | |||| |||| |  ||||| ||||||||||  | |||| | ||||| ||  | ||||| | ||||    
T  7099824 caacctcaaagctggcaaaatagaattctcgtgcggtaaagcccagatctcactctctttaatttctaaccatgctttttcttcacttcttgaatgcatt 7099923  T
Q  369 aaacttcccaatgattttgctgcaagaggcaatccattacatttctttactatctcctttcctattgccacgagatcagcacgctcttctttgtaatgtc 468  Q
    | ||  || |||| || ||||||||||||||||||   ||| || |||||||||||||| ||||||  ||| || ||||||||||||||| |||||||||    
T  7099924 agacaccctaatgcttgtgctgcaagaggcaatcctccacacttttttactatctccttgcctattttcacaagctcagcacgctcttctctgtaatgtc 7100023  T
Q  469 caaatgcatatt 480  Q
    ||||||||||||    
T  7100024 caaatgcatatt 7100035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 25293828 - 25293668
Alignment:
Q  68 atcttgaaagaatgatttttggtacaattcatcccaaaccatgatgccaacatcttcaacctccgtattacccctagatgaaatcaatccattagccatc 167  Q
    |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||  |||  ||||||||||||| |||||||||||||||    
T  25293828 atcttgaaagaatgatttttggcacaattcattccaaaccatgctgccaacatcttcaacctccaaattttccctagatgaaataaatccattagccatc 25293729  T
Q  168 caaagccaaatcaattcttcctttaggatatctgtatctttgggaaatatagcacaaaaag 228  Q
    |||||   | |||||||||||||   ||| | ||||||||| ||||| |||||||||||||    
T  25293728 caaagatgagtcaattcttccttatcgatttttgtatcttttggaaacatagcacaaaaag 25293668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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