View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_16 (Length: 471)
Name: NF13899_low_16
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 456
Target Start/End: Complemental strand, 28800755 - 28800304
Alignment:
| Q |
12 |
tcatcaccacctcacaatgcaagaaaatatgcgacgtcatttcctccacccttccgcacaacacacaattcttcgacgcctccccattcaacactcctct |
111 |
Q |
| |
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||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
28800755 |
tcatcaccacctcacaatgcaagaaaagatgtgatgtcgtttcctccacccttccgcacaacacacaattcttcgacgccttcccattcaaccctcctct |
28800656 |
T |
|
| Q |
112 |
agccgcaaggttcacccttgtcggaattctatcaagtagcatggtccaagcgaaaaccaagacctttggcggagctggaca-tttccaaatgtaaccaaa |
210 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |
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| T |
28800655 |
agtcgcaaggttcacccttgtcggaattctatcaagtagcatggtccaagcgaaaaccaagacctttgacggagcttgacattttccaaatgtaaccaaa |
28800556 |
T |
|
| Q |
211 |
cacccgttcctcgccttcggaaatattatcatcaat--aaaaaacaacctctcaagtagcttataacaagaattcaccgaaaaacctcctccatcttccg |
308 |
Q |
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||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28800555 |
cacccactcctcgccttcgggaatattatcatcaataaaaaaaacaacctctcaagtagcttataacaagaattcaccgaaaaacctccgccatcttccg |
28800456 |
T |
|
| Q |
309 |
gcatccaacaccactcatcttgcc----cttcacccaacaccactctctccaacctaccagctaaatctagaagaagttccgattcccaaacaaaaagat |
404 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28800455 |
gcgtccaacaccactcatcttgcccttgcttcacccaacaccactccctccaacctaccaactaaatctagaagaagttccgattcccaaacaaaaagat |
28800356 |
T |
|
| Q |
405 |
ctctacaccacaaaaaactctatcttctctcccccttggaatgactacaaac |
456 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28800355 |
ctctacaccacaaaaaactctatcttctctcccccttggaatgactacaaac |
28800304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 17192904 - 17192564
Alignment:
| Q |
20 |
acctcacaatgcaagaaaatatgcgacgtcatttcctccacccttccgcacaacacacaattcttcgacgcctccccattcaacactcctctagccgcaa |
119 |
Q |
| |
|
|||||| |||||||||||| || ||| | ||||||||||||| || |||||||||||||| ||||| |||||| |||||||||||||||||| | | | |
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|
| T |
17192904 |
acctcataatgcaagaaaaggtgtaacgccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgcattcaacactcctctagacacta |
17192805 |
T |
|
| Q |
120 |
ggttcacccttgtcggaattctatcaagtagcatggtccaagcgaaaaccaagacctttggcggagctggacatttccaaatgtaaccaaacacccgttc |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||| | |||| |||||||| || |||||||| || || || |
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| T |
17192804 |
ggttcacccttgtcggaattctatcaagtagcacggtcaaagcgaatgccaagaactttgacaaagcttaacatttcctaagataaccaaatacacgctc |
17192705 |
T |
|
| Q |
220 |
ctcgccttcggaaatattatcatcaataaaaaacaacctctcaagtagcttataacaagaattcaccgaaaaacctcctccatcttccggcatccaacac |
319 |
Q |
| |
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|| |||||| |||||||| || ||| ||||| | ||||||| ||| |||||||| ||||||||||| ||||||| |||| || ||| |||| | | |
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| T |
17192704 |
ct--ccttcgagaatattataattaattaaaaatagcctctcacatagtttataacacaaattcaccgaacaacctcccccattctctggcctccatctc |
17192607 |
T |
|
| Q |
320 |
cactcatcttgcccttcacccaacaccactctctccaacctacc |
363 |
Q |
| |
|
||||||||| ||||| ||||||||||||| ||||||| |||| |
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|
| T |
17192606 |
cactcatctcttccttc-cccaacaccactccctccaacatacc |
17192564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 52 - 297
Target Start/End: Original strand, 9443930 - 9444175
Alignment:
| Q |
52 |
ttcctccacccttccgcacaacacacaattcttcgacgcctccccattcaacactcctctagccgcaaggttcacccttgtcggaattctatcaagtagc |
151 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||| ||||| ||||||||||||||||| ||| || |||||||||||| |||| |||||||||||| |
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| T |
9443930 |
ttcctccacccttctgcacaatacacaatttctcgattcctccacattcaacactcctctatacgctagattcacccttgtcagaatcctatcaagtagc |
9444029 |
T |
|
| Q |
152 |
atggtccaagcgaaaaccaagacctttggcggagctggacatttccaaatgtaaccaaacacccgttcctcgccttcggaaatattatcatcaataaaaa |
251 |
Q |
| |
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|| |||||||||| |||| ||||| | ||| | | |||||||||| ||||||||| || | | || || |||| |||||||| ||||| |||| |
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| T |
9444030 |
atagtccaagcgattgccaaaaccttagacggggttttgcatttccaaaggtaaccaaaaacatgcgcatcaccatcggggatattatcctcaatcaaaa |
9444129 |
T |
|
| Q |
252 |
acaacctctcaagtagcttataacaagaattcaccgaaaaacctcc |
297 |
Q |
| |
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|| ||||||| ||||| ||||||||||| ||||| ||||||||||| |
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| T |
9444130 |
actacctctcgagtagtttataacaagagttcactgaaaaacctcc |
9444175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 9443858 - 9443923
Alignment:
| Q |
16 |
caccacctcacaatgcaagaaaatatgcgacgtcatttcctccacccttccgcacaacacacaatt |
81 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||||| ||||||||||||||| |||||| |||||||| |
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|
| T |
9443858 |
caccacctcacaatgcaaaaaaagatgcaacgtcgtttcctccacccttctgcacaatacacaatt |
9443923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 288
Target Start/End: Complemental strand, 21018716 - 21018633
Alignment:
| Q |
205 |
accaaacacccgttcctcgccttcggaaatattatcatcaataaaaaacaacctctcaagtagcttataacaagaattcaccga |
288 |
Q |
| |
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||||||||| || ||||| ||||||| | |||| |||| || ||||||| ||||||||| ||||||||||| || |||||||| |
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| T |
21018716 |
accaaacacacgctcctcatcttcggataaattaacatcgatcaaaaacagcctctcaagaagcttataacacgagttcaccga |
21018633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 47210052 - 47210022
Alignment:
| Q |
12 |
tcatcaccacctcacaatgcaagaaaatatg |
42 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
47210052 |
tcatcaccacctcacaatgcaagaaaatatg |
47210022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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