View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_2 (Length: 734)
Name: NF13899_low_2
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_2 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 625; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 18 - 678
Target Start/End: Original strand, 24455238 - 24455898
Alignment:
| Q |
18 |
cctttaagataccttgcaaggtcgccccaatgttggtttgacgaacctccttcgatatcgaagtcaatgccatcgagaacagcaggaccgagagggcgag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24455238 |
cctttaagataccttgcaaggtcgccccaatgttggtttgacgaacctccttcgatatcaaagtcaatgccatcgagaacagcaggaccgagagggcgag |
24455337 |
T |
|
| Q |
118 |
acgaagagtttccgcctaagaagttattccaaaggtaagtggctacaaggcttgcttcttgagtggattcaagtgggtagctacctttatctcctctcaa |
217 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455338 |
aggaagagtttccgcctaagaagttattccaaaggtaagtggctacaaggcttgcttcttgagtggattcaagtgggtagctacctttatctcctctcaa |
24455437 |
T |
|
| Q |
218 |
agagagcaatactttgattcctttggattgacagaatttgatatcagaggatagggcaatgcatccattagtactctgtggattacaatgaccagctagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24455438 |
agagagcaatactttgattcctttggattgacagaatttgatgtcagaggatagggccatgcatccattagcactctgtggattacaatgaccagctagg |
24455537 |
T |
|
| Q |
318 |
ttaatcatgggattttgggttgggataaaggttggtaagaatgctatgatcacatattcatagtttcttgtggcacaagtttcggctaacgagccttcat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455538 |
ttaatcatgggattttgggttgggataaaggttggtaagaaagctatgatcacatattcatagtttcttgtggcacaagtttcggctaacgagccttcat |
24455637 |
T |
|
| Q |
418 |
taccattttggccccaatagattacaattttgccagcatttgaacaatttgccaatgctaacatgactaatgagagggttaagattgagaatagaaatct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455638 |
taccattttggccccaatagattacaattttgccagcatttgaacaatttgctaatcctaacatgactaatgagagggttaagattgagaatagaaatct |
24455737 |
T |
|
| Q |
518 |
tagtgccattgctgatttggaataaattttagactaagaagtgttggtggagaatggcttttataaagttcatatgtcacaaacctctttaaaactttgg |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455738 |
tagtgccattgctgatttggaataaattttagactaagaagtgttggtggagaatggcttttataaagttcatatgtcacaaacctctttaaaactttgg |
24455837 |
T |
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| Q |
618 |
agttttcctcataaaaacgtagcttggcagtcactttatgtaaaatattttatcaaattct |
678 |
Q |
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| T |
24455838 |
agttttcctcataaaaacgtagcttggcaatcactttatgtaaaatattttatcaaattct |
24455898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 24367618 - 24368074
Alignment:
| Q |
18 |
cctttaagataccttgcaaggtcgccccaatgttggtttgacgaacctccttcgatatcgaagtcaatgccatcgagaacagcaggaccgagagggcgag |
117 |
Q |
| |
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|||||||| ||||| ||||| || |||||||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||| |
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| T |
24367618 |
cctttaaggtacctagcaagatcaccccaatgttggcttgat---cctccttcgatatcaaagtcaatgccatcaagaacagcaggaccaagagggcgag |
24367714 |
T |
|
| Q |
118 |
acgaagagtttccgcctaagaagttattccaaaggtaagtggctacaaggcttgcttcttgagtggattcaagtgggtagctacctttatctcctctcaa |
217 |
Q |
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| T |
24367715 |
atgaagattttccacccaagaagttattccaaaggtaagttgctacactgtttgcatcttttgtggatgcaattgagtagcttccagcacctcctcctat |
24367814 |
T |
|
| Q |
218 |
agagagcaatactttgattcctttggattgacagaatttgatatcagaggatagggcaatgcatccattagtactctgtggattacaatgaccagctagg |
317 |
Q |
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|| | |||||||||||||||||||| |||||| | ||||| || ||| || | || ||||||||| |||| | ||||| ||||||||||||||| |
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| T |
24367815 |
cgacaacaatactttgattcctttggcttgacatgacttgatgtctgagcttaagccagtgcatccat---tactgtatggatcacaatgaccagctaga |
24367911 |
T |
|
| Q |
318 |
ttaatcatgggattttgggttgggataaaggttggtaagaatgctatgatcacatattcatagtttcttgtggcacaagtttcggctaacgagccttcat |
417 |
Q |
| |
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|||||||| ||| ||||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||||| || ||||||| ||| || | |
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| T |
24367912 |
ttaatcatcggagtttggccatctccgaaggtcggtaagaaggctatgatcacatattcatagtttcctgtggcacaagcctcagctaacgtgccctcgt |
24368011 |
T |
|
| Q |
418 |
taccattttggccccaatagattacaattttgccagcatttgaacaatttgccaatgctaaca |
480 |
Q |
| |
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| || || |||||||| |||||| ||||||| || ||||| |||| ||| || | |||||||| |
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| T |
24368012 |
ttccgttctggccccagtagattgcaatttttcctgcattagaaccattcgctagtgctaaca |
24368074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 677 - 718
Target Start/End: Original strand, 24455915 - 24455956
Alignment:
| Q |
677 |
cttactaatttatcaatcaattggcattatttctcacctatg |
718 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24455915 |
cttactaatttaccaatcaattggcattatttctcacctatg |
24455956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 103; Significance: 7e-51; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 18 - 492
Target Start/End: Complemental strand, 148778 - 148310
Alignment:
| Q |
18 |
cctttaagataccttgcaaggtcgccccaatgttggtttgacgaacctccttcgatatcgaagtcaatgccatcgagaacagcaggaccgagagggcgag |
117 |
Q |
| |
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|||||||| ||| | ||||| || |||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||||||||| |||||||||| |
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| T |
148778 |
cctttaaggtacttggcaagatcaccccaatgttggtttgac---cctccttcaatatcgaagtcgatgccgtcaagaacagcaggaccaagagggcgag |
148682 |
T |
|
| Q |
118 |
acgaagagtttccgcctaagaagttattccaaaggtaagtggctacaaggcttgcttcttgagtggattcaagtgggtagctacctttatctcctctcaa |
217 |
Q |
| |
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||||||| | ||| || ||||||||||||||||||||||| |||||| |||| ||||| |||||| ||| || |||||| || | |||||| || |
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| T |
148681 |
acgaagattgtccacccaagaagttattccaaaggtaagttgctacactttttgcatcttgtgtggatgcaattgagtagcttccagcacctcctcctaa |
148582 |
T |
|
| Q |
218 |
agagagcaatactttgattcctttggattgacagaatttgatatcagaggatagggcaatgcatccattagtactctgtggattacaatgaccagctagg |
317 |
Q |
| |
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|| | |||||||||||| ||||||| |||||| ||||||| || ||| || | || |||| | | | || | ||||| |||||||||||||| |
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| T |
148581 |
tgacaacaatactttgatgcctttggcttgacatgatttgatgtctgagcttaagccagtgcactcgt---tgctgtatggatcgcaatgaccagctaga |
148485 |
T |
|
| Q |
318 |
ttaatcatgggattttgggttgggataaaggttggtaagaatgctatgatcacatattcatagtttcttgtggcacaagtttcggctaacgagccttcat |
417 |
Q |
| |
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|| ||||| ||| ||||| |||||||||||||| ||||||||||||||||| ||||| | ||||||||||| |||||||||| ||| || | |
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| T |
148484 |
ttgatcattggagtttggccatcaccgaaggttggtaagaaggctatgatcacatattcgtagttccctgtggcacaagcctcggctaacgtgccctcgt |
148385 |
T |
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| Q |
418 |
taccattttggccccaatagattacaattttgccagcatttgaacaatttgccaatgctaacatgactaatgaga |
492 |
Q |
| |
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| ||||| ||||||||||| ||| ||||||||||||||| ||| |||||||| |||||| |||||||| |||| |
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| T |
148384 |
ttccattctggccccaataaattgaaattttgccagcattagaatcatttgccagtgctaaaatgactaaggaga |
148310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 19136032 - 19136132
Alignment:
| Q |
63 |
cctccttcgatatcgaagtcaatgccatcgagaacagcaggaccgagagggcgagacgaagagtttccgcctaagaagttattccaaaggtaagtggcta |
162 |
Q |
| |
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||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||| ||| | ||| || ||||| || |||||||| ||||| |||| |
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| T |
19136032 |
cctccttcgatgtcgaaatcgatgccatcgagaacagcaggaccgagaggacgagacggagattgtcctcccaagaaattgttccaaagataagttgcta |
19136131 |
T |
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| Q |
163 |
c |
163 |
Q |
| |
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| |
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|
| T |
19136132 |
c |
19136132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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