View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_20 (Length: 443)
Name: NF13899_low_20
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Original strand, 53089063 - 53089498
Alignment:
| Q |
10 |
attattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat-----------------catggaacttcttggctagttccctttttcc |
92 |
Q |
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| T |
53089063 |
attattctggtaatgtgatgcatatagcatacttatactcgctaaaattcatacaaactcgtcactcatcatggaacttcttggctagttccctttttcc |
53089162 |
T |
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| Q |
93 |
ttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttgaggtaacatcac |
192 |
Q |
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| T |
53089163 |
ttgaaaaaatacctcctataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttgaggtaacatcac |
53089262 |
T |
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| Q |
193 |
atgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactccatcattaattcttcatcaaatcttgaacttttcacttcaaaggtt |
292 |
Q |
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| T |
53089263 |
atgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactccatcattaattcttcatcaaatcttgaacttttcacttcaaaggtt |
53089362 |
T |
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| Q |
293 |
gttaaattctcaacaaacttcacgtcttcagtttctgatgattccacttgatgtttttcagtttcacgttgcttcaattgttcgagctcttgcttcgtgc |
392 |
Q |
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| T |
53089363 |
gttaaattctcaacaaacttcacgtcttcagtttctgatgattccacttgatgtttttcagtttcacgttgcttcaattgttcgagctcttgcttcgtgc |
53089462 |
T |
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| Q |
393 |
gttcgagttcttcctgaagagatgacatacaatgtg |
428 |
Q |
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| T |
53089463 |
gttcgagttcttcctgaagagatgacatacaatgtg |
53089498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 56 - 340
Target Start/End: Original strand, 14333826 - 14334119
Alignment:
| Q |
56 |
attcatcatggaacttcttggctagttccctttttccttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggt |
155 |
Q |
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| T |
14333826 |
attcatcatggaacttcttggttagttccctttttcctagaaaatatgcctccaataagtggaatcaatgacttcttcttcttcttcctaagagaagggt |
14333925 |
T |
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| Q |
156 |
gcctttccaacttctcaacacct---------tgaggtaacatcacatgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactc |
246 |
Q |
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| T |
14333926 |
gcctttccaacttctcaacaccttgatgaccttgaggtaacatgacatgagaaactgacggtggattcgcgaacgtcacataccttttcttttgaaattc |
14334025 |
T |
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| Q |
247 |
catcattaattcttcatcaaatcttgaacttttcacttcaaaggttgttaaattctcaacaaacttcacgtcttcagtttctgatgattccact |
340 |
Q |
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| T |
14334026 |
catcattaattcttcatcaaatcttgaacttttcagttcaaaggttgttaaattctcaacaaacttcacgtcttcagtttctgatgatttcact |
14334119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 14333763 - 14333814
Alignment:
| Q |
10 |
attattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat |
61 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14333763 |
attaatctggtaatgtaatgcatgaagcatacttatactcgctaaaattcat |
14333814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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