View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_21 (Length: 441)
Name: NF13899_low_21
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 124 - 359
Target Start/End: Original strand, 32269702 - 32269940
Alignment:
| Q |
124 |
cagcaaacgtgacaacacatgcccctgcaaaaa-tcaaacaacactataacttcaaagtacatgacatttgcagtagaccacattccatgtttacaaatt |
222 |
Q |
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| T |
32269702 |
cagcaaacggaacaacacatgcccctcaaaaaaatctaacaacactataactccaaagcacatgacatttgcagtagaccacattccatgattacaaatt |
32269801 |
T |
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| Q |
223 |
atatccgcat--gaaatctccacactcaatcataccgatccaacggccacaatctcactgaaatcacaaaacaacatgaggcaatgcaaatgcttatgat |
320 |
Q |
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| T |
32269802 |
atatccccatatgaaatctccacactcaatcacactgatccaacggccaaaatctcactaaaatcacaaaacaatatgaagcaatgcaaatgcttatgat |
32269901 |
T |
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| Q |
321 |
ctataacaactataaaataggaatgatagttatactaaa |
359 |
Q |
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| T |
32269902 |
ctataacaactataaaatagcaatggtagttatactaaa |
32269940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 32809661 - 32809822
Alignment:
| Q |
32 |
acatgtttttt-aacggagattagtcattgttaaatgaaacagaaacttcc-taccaatattatgtgcaacnnnnnnnnntgcagtactttatgcagcaa |
129 |
Q |
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| T |
32809661 |
acatgttttttgaacggagattagtcattattaaatgagacggaaacttccgtactaatattatgtgcaac--aaaaaaatgcactactttatgcagcaa |
32809758 |
T |
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| Q |
130 |
acgtgaca--acacatgcccctgcaaaaatcaaacaacactataacttcaaagtacatgacatt |
191 |
Q |
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| T |
32809759 |
acgtgacatctctcacgcccctcgaaaaatcaaacatcgccataacttcaaagtacatgacatt |
32809822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 32809840 - 32809908
Alignment:
| Q |
258 |
atccaacggccacaatctcactgaaatcacaaaacaacatgaggcaatgcaaatgcttatgatctataa |
326 |
Q |
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| T |
32809840 |
atccaacggccacaagttcactcgaatcgcaaaacaacatgaggcaaagcaaatgcttatgatctataa |
32809908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 403 - 436
Target Start/End: Original strand, 32270283 - 32270316
Alignment:
| Q |
403 |
tttcaatataagtcgtcctttctcctatgctact |
436 |
Q |
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| T |
32270283 |
tttcaatataagtcgtcctttctcctatgctact |
32270316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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