View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_22 (Length: 433)
Name: NF13899_low_22
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 4381054 - 4380641
Alignment:
| Q |
18 |
atactctctgtttagggcagacagacaggaaactaggcagaaaattgggactacaatcgcatcaaacaactttagcaactgaagtagaccttcctgagac |
117 |
Q |
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| T |
4381054 |
atactctctgtttagggcagacagacaggaaactaggcagaaaattgggactacaatcgcatcaaacaactttagcaactgaagtagaccttcctgagac |
4380955 |
T |
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| Q |
118 |
ctaactttactatactttgtgtttaataagtctagtaccttacaacttttggaacctcatttggcatttttgccataacactcctcctcctgtcctatat |
217 |
Q |
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| T |
4380954 |
ctaactttactatactttgtgtttaataagtctagtaccttacaacttttggaacctcatttggcatttttgccataacactcctccttctgtcctatat |
4380855 |
T |
|
| Q |
218 |
tacactacacaaaccacaaatagagtttgataaacaataaaatcattataggtataaaatttgttcatccaattaaacaataatgtagatgaaaaattat |
317 |
Q |
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| T |
4380854 |
tacactacacaaaccacaaatagagtttgataaacaataaaatcattataggtataaaatttgttcatccaattaaacaataatgtagatgaaaaattat |
4380755 |
T |
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| Q |
318 |
t---taatcacattagtacaatagtacttaaataatgttatagactcgttttttaaccttgatcatctataatttgatttatttgatatgatttactatt |
414 |
Q |
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| T |
4380754 |
ttaataatcacattagtacaatagtacttaaataatgttatagactcgttttttaaccttgatcatctataatttgatttatttgatatgatttactatt |
4380655 |
T |
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| Q |
415 |
ttacattcatctca |
428 |
Q |
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| T |
4380654 |
ttacattcatctca |
4380641 |
T |
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