View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_23 (Length: 433)
Name: NF13899_low_23
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_23 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 33890880 - 33891312
Alignment:
| Q |
1 |
aatttctaactcttcaaattccatggagttaagcaaaactttgataacttgggcaaatcgatagagaaaatagaaagaatgttttcacagtagacgaagg |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33890880 |
aatttctaactcttcaaactccatggagttaagcaaaactttgataacttgggcgaatcgatagatgaaatagaaagaatgttttcacagtagacgaagg |
33890979 |
T |
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| Q |
101 |
acggaaggtctgaggccgcggtaccaatcttcgttggaaggcgagaagtagttagcttgagactacgcaatgtggaactaaccatatgaatcatgtggtg |
200 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33890980 |
acggaaggtctgaggccgtgataccaatcttcgttggaaggcgagaagtaattagcttgagactacgcaatgtggaactaaccatatgaatcatgtggtg |
33891079 |
T |
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| Q |
201 |
gaatatacaatctatgaagataaggtttccaagattgaagcatttataaaacagatataacaagacatccttctctactttgaattcctctatcacaagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33891080 |
gaatatacaatctatgaagataaggtttccaagattgaagcatttataaaacagacataacaagacatccttctctactttgaattcctctatcacaagc |
33891179 |
T |
|
| Q |
301 |
gtcttaagatgcttaaatccagaaaagttcgcatgtggcaatctaaaacagtttatgtaaggaaatgtgtaagtttcaaggttaggcattccattccata |
400 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33891180 |
gtcttaagatgcttaaatccagaaaagttggcatgtggcaatcgaaaacagtttatgtaaggaaatgtgtaagtttcaaggttaggcattccattccata |
33891279 |
T |
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| Q |
401 |
aggtacatttgagaagaagaggtgaatgtgttc |
433 |
Q |
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| T |
33891280 |
aggtacatttgagaagaagaggtgaatgtgttc |
33891312 |
T |
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