View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_25 (Length: 421)
Name: NF13899_low_25
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 21 - 399
Target Start/End: Complemental strand, 37224640 - 37224261
Alignment:
| Q |
21 |
agagtaaccattaggacatgatggtttgtattctaaattatccnnnnnnn-gtgcggttgtagggaaacatccgcagagtacagcagaaaaacatggaaa |
119 |
Q |
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| T |
37224640 |
agagtaaccattaggacatgatggtttgtattctaaattatccttttttttgtgcggttgtagggaaacatccgcagagtacagcagaaaaacatggaaa |
37224541 |
T |
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| Q |
120 |
ttaggtagagaacttctcaaaggaatatcagaaagtttgggtttggaagtcaactatatagacaaaacaatgaatctagattctggtttacaaatgttgg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37224540 |
ttaggtagagaacttctcaaaggaatatcagaaagtttgggtttggaagtcaactatatagacaaaacaatgaatctagattctggtttacaaatgttgg |
37224441 |
T |
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| Q |
220 |
cagcaaatctttatcctccttgtcctcaacctgagcttgcaatgggaatgcccccacattccgatcatggcctcttgaacctcctcatccagaatggagt |
319 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37224440 |
cagcaaatctttatcctccttgtcctcaacctgatcttgcaatgggaatgcccccacattccgatcatggcctcttgaacctcctcatccagaatggagt |
37224341 |
T |
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| Q |
320 |
tagtggccttcaagttcttcacaatggcaagtggatcaatgtcagttccacttcaaactgtttcttggtccttgtctctg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37224340 |
tagtggccttcaagttcttcacaatggcaagtggatcaatgtcagttccacttcaaactgtttcttggtcctcgtctctg |
37224261 |
T |
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