View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13899_low_27 (Length: 421)

Name: NF13899_low_27
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13899_low_27
NF13899_low_27
[»] chr7 (6 HSPs)
chr7 (12-407)||(2206652-2207047)
chr7 (155-257)||(4119341-4119444)
chr7 (155-257)||(7590195-7590298)
chr7 (175-257)||(7592176-7592258)
chr7 (179-257)||(15201902-15201980)
chr7 (179-257)||(15172476-15172554)
[»] chr6 (3 HSPs)
chr6 (154-265)||(12172449-12172560)
chr6 (155-257)||(23896520-23896623)
chr6 (179-257)||(18419727-18419805)
[»] chr5 (16 HSPs)
chr5 (155-257)||(22488347-22488450)
chr5 (175-257)||(22129373-22129455)
chr5 (179-257)||(4635121-4635199)
chr5 (179-257)||(18568212-18568290)
chr5 (179-257)||(24412003-24412081)
chr5 (179-257)||(24421463-24421541)
chr5 (179-257)||(30445764-30445842)
chr5 (179-257)||(30455136-30455214)
chr5 (179-257)||(30460194-30460272)
chr5 (155-257)||(22158503-22158605)
chr5 (175-257)||(24279261-24279343)
chr5 (175-257)||(24382871-24382953)
chr5 (203-256)||(13581818-13581871)
chr5 (203-256)||(13588553-13588606)
chr5 (203-256)||(13589446-13589499)
chr5 (165-244)||(35728909-35728988)
[»] scaffold0040 (2 HSPs)
scaffold0040 (155-257)||(31724-31827)
scaffold0040 (214-257)||(9195-9238)
[»] scaffold0001 (1 HSPs)
scaffold0001 (155-257)||(412474-412577)
[»] chr4 (15 HSPs)
chr4 (155-257)||(15843824-15843927)
chr4 (155-257)||(3243196-3243299)
chr4 (179-257)||(3917241-3917319)
chr4 (179-257)||(54690849-54690927)
chr4 (179-257)||(54700280-54700358)
chr4 (155-257)||(39128606-39128709)
chr4 (176-257)||(37058245-37058326)
chr4 (155-257)||(26811685-26811786)
chr4 (155-257)||(26821152-26821253)
chr4 (218-263)||(23443847-23443892)
chr4 (161-224)||(18126333-18126396)
chr4 (217-253)||(23621971-23622007)
chr4 (218-264)||(16491047-16491093)
chr4 (218-264)||(17239014-17239060)
chr4 (203-253)||(45608606-45608656)
[»] chr2 (2 HSPs)
chr2 (155-257)||(31711379-31711482)
chr2 (155-253)||(24023666-24023764)
[»] scaffold0233 (1 HSPs)
scaffold0233 (155-257)||(27030-27133)
[»] chr8 (3 HSPs)
chr8 (179-266)||(20709828-20709914)
chr8 (155-257)||(7789987-7790088)
chr8 (180-257)||(15833173-15833250)
[»] scaffold0028 (2 HSPs)
scaffold0028 (179-257)||(95367-95445)
scaffold0028 (179-257)||(104808-104886)
[»] chr3 (10 HSPs)
chr3 (179-257)||(28352656-28352734)
chr3 (179-257)||(28368588-28368666)
chr3 (179-257)||(28376406-28376484)
chr3 (179-257)||(28384228-28384306)
chr3 (208-257)||(24814575-24814624)
chr3 (158-246)||(27168334-27168422)
chr3 (161-224)||(4362437-4362500)
chr3 (218-266)||(32876768-32876816)
chr3 (221-264)||(54623270-54623313)
chr3 (155-253)||(38530057-38530152)
[»] scaffold0101 (1 HSPs)
scaffold0101 (218-265)||(43086-43133)
[»] chr1 (5 HSPs)
chr1 (207-256)||(41001370-41001419)
chr1 (218-263)||(25880958-25881003)
chr1 (218-263)||(28315089-28315133)
chr1 (214-257)||(15811268-15811311)
chr1 (175-267)||(16768996-16769088)
[»] scaffold0482 (2 HSPs)
scaffold0482 (155-257)||(1825-1926)
scaffold0482 (155-257)||(2711-2812)
[»] scaffold0021 (1 HSPs)
scaffold0021 (156-264)||(176408-176518)
[»] scaffold0247 (1 HSPs)
scaffold0247 (218-263)||(23552-23597)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 407
Target Start/End: Original strand, 2206652 - 2207047
Alignment:
Q  12 aagaatgacttagattttgattttaatgattcaaacttgaatattcttctaaagccaaattatgcctttgtgttg---atttgtctttttgatgatcatg 108  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| || ||||||||||||| |  ||| | |||   ||||||||||| |||||||||     
T  2206652 aagaatgactt-gattttgattttaatgattcaaacttcaatatttttgtaaagccaaattacgttttttttttgctgatttgtctttt-gatgatcatc 2206749  T
Q  109 ttttatttgctctgtgaaaccaaaatgttcttactcatgtga-catatcattttcatgaaacaatcatcacaaaacaaattagtagataaaaacttgaga 207  Q
    ||||||||| | ||| |||||||||||| ||| ||||||||| ||||||||| ||| |||||||| |||||||||||||| ||||||||| || || |||    
T  2206750 ttttatttggtttgtaaaaccaaaatgtacttgctcatgtgatcatatcattctcacgaaacaataatcacaaaacaaatcagtagataacaatttaaga 2206849  T
Q  208 taaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtcttcaacaaacacacacatatagacaagattttacatt-acattgaacaaga 306  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    ||||||||| ||||||||| || || ||| |||| ||||    
T  2206850 taaatttaatatgtttgtaatatttaaaacatcaaataagaattttgtcttcaacaa----acacatataaacaagatttcactttaacagtgaataaga 2206945  T
Q  307 atatgcttaaagtcgcacattgtccaacagagaaacatcttgctaatg-tttttacaaaatatatgaagattgacatatttatcaaattaagaagtatga 405  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2206946 atatgcttaaggtcacacattgtccaacagagaaacatcttgctaatgttttttacaaaatatatgaagattgacatatttatcaaattaagaagtatga 2207045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 4119341 - 4119444
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||    
T  4119341 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggatttt 4119440  T
Q  254 gtct 257  Q
    ||||    
T  4119441 gtct 4119444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 7590298 - 7590195
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||    
T  7590298 tcattatcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggatttt 7590199  T
Q  254 gtct 257  Q
    ||||    
T  7590198 gtct 7590195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 7592258 - 7592176
Alignment:
Q  175 tcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  7592258 tcacaaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 7592176  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 15201980 - 15201902
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||  ||||||||||| |||||||||    
T  15201980 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaacgcatcaaataaggattttgtct 15201902  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 15172554 - 15172476
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||| |||||||||  |||||| |||||||||    
T  15172554 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatcattaaaacatggaataaggattttgtct 15172476  T

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Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 12172560 - 12172449
Alignment:
Q  154 atcattttcatgaaacaatcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    |||||| |||||||| ||| |||||| ||||| ||||||||||| ||  ||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  12172560 atcattctcatgaaataattatcacagaacaagttagtagataacaagatgaaataaatttaatatgtttgtaatttttaaaacatcaaataagaatttt 12172461  T
Q  254 gtcttcaacaaa 265  Q
    |||  |||||||    
T  12172460 gtcaacaacaaa 12172449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 23896520 - 23896623
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||  |||||    
T  23896520 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataatgatttt 23896619  T
Q  254 gtct 257  Q
    ||||    
T  23896620 gtct 23896623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 18419805 - 18419727
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  18419805 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 18419727  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 22488450 - 22488347
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  22488450 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataagaatttt 22488351  T
Q  254 gtct 257  Q
    ||||    
T  22488350 gtct 22488347  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 22129373 - 22129455
Alignment:
Q  175 tcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||||||||||||||||||||| ||  | | ||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  22129373 tcacaaaacaaattagtagataacaaaattaaataaatttaatatgtttgtaatctttaaaacatcaaataaagattttgtct 22129455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 4635199 - 4635121
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  4635199 aaaacgaattagtagataacaagattaaataaatgtaatatgtttgtaatctttaaaacatcaaataaggattttgtct 4635121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 18568290 - 18568212
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  18568290 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 18568212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 24412081 - 24412003
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  24412081 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 24412003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 24421541 - 24421463
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  24421541 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 24421463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 30445764 - 30445842
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  30445764 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 30445842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 30455136 - 30455214
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  30455136 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 30455214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 30460194 - 30460272
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  30460194 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 30460272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 22158503 - 22158605
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  |||||||| |||||||||||||| ||  | | ||||||| |||||||||||||||||||||| |||||||||| |||||    
T  22158503 tcattctcatgaaacaaattctcacaaaaaaaattagtagataacaagattaaataaatt-aatatgtttgtaatctttaaaatatcaaataaggatttt 22158601  T
Q  254 gtct 257  Q
    ||||    
T  22158602 gtct 22158605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 24279261 - 24279343
Alignment:
Q  175 tcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||||||  ||||||||||||| ||  | | |||||| ||| |||||||||||||||||||||||||||||| |||||||||    
T  24279261 tcacaaaatgaattagtagataacaagattaaataaatataacatgtttgtaatctttaaaacatcaaataaggattttgtct 24279343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 24382953 - 24382871
Alignment:
Q  175 tcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||||||  ||||||||||||| ||  | | |||||| ||| |||||||||||||||||||||||||||||| |||||||||    
T  24382953 tcacaaaatgaattagtagataacaagattaaataaatataacatgtttgtaatctttaaaacatcaaataaggattttgtct 24382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 13581871 - 13581818
Alignment:
Q  203 tgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtc 256  Q
    |||||||||||||||||||||||||||||||||| || |||| || ||||||||    
T  13581871 tgagataaatttaatatgtttgtaatctttaaaatataaaatgaggattttgtc 13581818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 13588553 - 13588606
Alignment:
Q  203 tgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtc 256  Q
    |||||||||||||||||||||||||||||||||| || |||| || ||||||||    
T  13588553 tgagataaatttaatatgtttgtaatctttaaaatataaaatgaggattttgtc 13588606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 13589446 - 13589499
Alignment:
Q  203 tgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtc 256  Q
    |||||||||||||||||||||||||||||||||| || |||| || ||||||||    
T  13589446 tgagataaatttaatatgtttgtaatctttaaaatataaaatgaggattttgtc 13589499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 35728909 - 35728988
Alignment:
Q  165 gaaacaatcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaat 244  Q
    |||||| ||| |||||||||| |||| ||| || ||  |  ||||||||||||||||||| |||||||||||||||||||    
T  35728909 gaaacattcaacacaaaacaagttagaagaaaacaagattggataaatttaatatgtttgcaatctttaaaacatcaaat 35728988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 31724 - 31827
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||    
T  31724 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggatttt 31823  T
Q  254 gtct 257  Q
    ||||    
T  31824 gtct 31827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 9238 - 9195
Alignment:
Q  214 taatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    |||||||||||||||||||||||||||||||| | |||||||||    
T  9238 taatatgtttgtaatctttaaaacatcaaatacggattttgtct 9195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 412577 - 412474
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||    
T  412577 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggatttt 412478  T
Q  254 gtct 257  Q
    ||||    
T  412477 gtct 412474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 15843824 - 15843927
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||    
T  15843824 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggatttt 15843923  T
Q  254 gtct 257  Q
    ||||    
T  15843924 gtct 15843927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 3243196 - 3243299
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||| ||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||    
T  3243196 tcattctcatgaaacaaattctcacaaaacgaattagtggataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggatttt 3243295  T
Q  254 gtct 257  Q
    ||||    
T  3243296 gtct 3243299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 3917319 - 3917241
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  3917319 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 3917241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 54690849 - 54690927
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  54690849 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 54690927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 54700280 - 54700358
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  54700280 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 54700358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 39128606 - 39128709
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  |||||||| ||| |||||||||| ||  | | |||||| |||||||||||||||||||||||||| ||||||| |||||    
T  39128606 tcattctcatgaaacaaattctcacaaaaaaaaatagtagataacaaaattaaataaatataatatgtttgtaatctttaaaacattaaataaggatttt 39128705  T
Q  254 gtct 257  Q
    ||||    
T  39128706 gtct 39128709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 37058326 - 37058245
Alignment:
Q  176 cacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    |||||||| ||||||||||||| ||  | | |||||| |||||||||| ||||||||||||||||||||||  |||||||||    
T  37058326 cacaaaacgaattagtagataacaagattaaataaatataatatgtttataatctttaaaacatcaaataatgattttgtct 37058245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 26811786 - 26811685
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| ||||  |||||||||||||||||||||||||||| |||||    
T  26811786 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataat--gtttgtaatctttaaaacatcaaataaggatttt 26811689  T
Q  254 gtct 257  Q
    ||||    
T  26811688 gtct 26811685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 26821253 - 26821152
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| ||||  |||||||||||||||||||||||||||| |||||    
T  26821253 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataat--gtttgtaatctttaaaacatcaaataaggatttt 26821156  T
Q  254 gtct 257  Q
    ||||    
T  26821155 gtct 26821152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 23443847 - 23443892
Alignment:
Q  218 atgtttgtaatctttaaaacatcaaataagaattttgtcttcaaca 263  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||    
T  23443847 atgtttgtaatctttaaaacatcaaataaggattttgtcatcaaca 23443892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 18126333 - 18126396
Alignment:
Q  161 tcatgaaacaatcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttg 224  Q
    |||||||||||| ||||||||| |||||||||||||| ||  ||| |||||||||| |||||||    
T  18126333 tcatgaaacaattatcacaaaataaattagtagataacaagatgaaataaatttaacatgtttg 18126396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 23622007 - 23621971
Alignment:
Q  217 tatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||||||||||||||||||||||||||||| |||||    
T  23622007 tatgtttgtaatctttaaaacatcaaataaggatttt 23621971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 16491047 - 16491093
Alignment:
Q  218 atgtttgtaatctttaaaacatcaaataagaattttgtcttcaacaa 264  Q
    |||||| |||||| |||||||||||||||| |||||||| |||||||    
T  16491047 atgtttataatctgtaaaacatcaaataaggattttgtcctcaacaa 16491093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 17239060 - 17239014
Alignment:
Q  218 atgtttgtaatctttaaaacatcaaataagaattttgtcttcaacaa 264  Q
    |||||||||||||||| |||||||||| || |||||||| |||||||    
T  17239060 atgtttgtaatctttacaacatcaaatcaggattttgtcctcaacaa 17239014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 45608656 - 45608606
Alignment:
Q  203 tgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    |||||||||||||| |||| |||||| ||||||||||||||| || |||||    
T  45608656 tgagataaatttaaaatgtgtgtaatatttaaaacatcaaatgaggatttt 45608606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 31711379 - 31711482
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||    
T  31711379 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggatttt 31711478  T
Q  254 gtct 257  Q
    ||||    
T  31711479 gtct 31711482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 24023666 - 24023764
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| ||||||||||||||||||| |||||||||||||| |||||    
T  24023666 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataatatgtttgtaatcttt-aaacatcaaataaggatttt 24023764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 27030 - 27133
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||| ||||||| |||||    
T  27030 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacattaaataaggatttt 27129  T
Q  254 gtct 257  Q
    ||||    
T  27130 gtct 27133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 20709914 - 20709828
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtcttcaacaaac 266  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  20709914 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtc-tcaacaaac 20709828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 7789987 - 7790088
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| ||||  ||||||||||||||||||||||| |||| |||||    
T  7789987 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataat--gtttgtaatctttaaaacatcaattaaggatttt 7790084  T
Q  254 gtct 257  Q
    ||||    
T  7790085 gtct 7790088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 15833250 - 15833173
Alignment:
Q  180 aaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    |||||||||||||||| | ||  | | |||||  ||| ||||||||||||||| |||||||||||||  |||||||||    
T  15833250 aaacaaattagtagatgataagattaaataaagataacatgtttgtaatctttgaaacatcaaataaagattttgtct 15833173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 95367 - 95445
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  95367 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 95445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 104808 - 104886
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  104808 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 104886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 28352656 - 28352734
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  28352656 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 28352734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 28368588 - 28368666
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  28368588 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 28368666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 28376406 - 28376484
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  28376406 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 28376484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 28384228 - 28384306
Alignment:
Q  179 aaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| ||||||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  28384228 aaaacgaattagtagataacaagattaaataaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 28384306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 24814575 - 24814624
Alignment:
Q  208 taaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  24814575 taaatataatatgtttgtaatctttaaaacatcaaataaggattttgtct 24814624  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 27168422 - 27168334
Alignment:
Q  158 ttttcatgaaacaatcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataa 246  Q
    |||||||||||||||  |||||||||||| |||||||||| ||  | | |||||| ||| ||||||||  |||||||||||||||||||    
T  27168422 ttttcatgaaacaattttcacaaaacaaactagtagataacaagattaaataaatataacatgtttgtggtctttaaaacatcaaataa 27168334  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 4362437 - 4362500
Alignment:
Q  161 tcatgaaacaatcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttg 224  Q
    |||||||||||| ||||||||| |||||||||||||| ||  ||| |||||||||| |||||||    
T  4362437 tcatgaaacaattatcacaaaataaattagtagataacaagatgaaataaatttaacatgtttg 4362500  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 32876816 - 32876768
Alignment:
Q  218 atgtttgtaatctttaaaacatcaaataagaattttgtcttcaacaaac 266  Q
    ||||||||||||||||||||||  |||||| |||||||| |||||||||    
T  32876816 atgtttgtaatctttaaaacattgaataaggattttgtcctcaacaaac 32876768  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 54623313 - 54623270
Alignment:
Q  221 tttgtaatctttaaaacatcaaataagaattttgtcttcaacaa 264  Q
    ||||||||||||||||||||||||||| ||||| || |||||||    
T  54623313 tttgtaatctttaaaacatcaaataaggattttttcctcaacaa 54623270  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 38530057 - 38530152
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  |    ||||| ||||||||||||||||||||||| || ||||||| |||||    
T  38530057 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagat----taaatataatatgtttgtaatctttaaaatattaaataaggatttt 38530152  T

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Target: scaffold0101 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 43086 - 43133
Alignment:
Q  218 atgtttgtaatctttaaaacatcaaataagaattttgtcttcaacaaa 265  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  43086 atgtttgtaatctttaaaacatcaaataaaaattttgtcctcaacaaa 43133  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 41001370 - 41001419
Alignment:
Q  207 ataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtc 256  Q
    ||||||| | |||| |||||||||||||||||||||||||||||||||||    
T  41001370 ataaattcattatgattgtaatctttaaaacatcaaataagaattttgtc 41001419  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 25881003 - 25880958
Alignment:
Q  218 atgtttgtaatctttaaaacatcaaataagaattttgtcttcaaca 263  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||    
T  25881003 atgtttgtaatctttaaaacatcaaataaggattttttcctcaaca 25880958  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 28315089 - 28315133
Alignment:
Q  218 atgtttgtaatctttaaaacatcaaataagaattttgtcttcaaca 263  Q
    |||||||||||||||||||  |||||||||||||||||||||||||    
T  28315089 atgtttgtaatctttaaaat-tcaaataagaattttgtcttcaaca 28315133  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 15811268 - 15811311
Alignment:
Q  214 taatatgtttgtaatctttaaaacatcaaataagaattttgtct 257  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||    
T  15811268 taatatatttgtaatctttaaaacataaaataaggattttgtct 15811311  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 16768996 - 16769088
Alignment:
Q  175 tcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaattttgtcttcaacaaaca 267  Q
    |||||||||| |||||||||||| ||  | | |||| ||| |||||| ||||||| |||| ||||||| | || ||||||| ||||| |||||    
T  16768996 tcacaaaacacattagtagataacaagataaaataatttttatatgtgtgtaatccttaacacatcaattgaggattttgttttcaataaaca 16769088  T

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Target: scaffold0482 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 1926 - 1825
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||| ||  | | |||||| ||||  ||||||||||||||||||||||| |||| |||||    
T  1926 tcattctcatgaaacaaattctcacaaaacgaattagtagataacaagattaaataaatataat--gtttgtaatctttaaaacatcaattaaggatttt 1829  T
Q  254 gtct 257  Q
    ||||    
T  1828 gtct 1825  T

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Target: scaffold0482; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 2812 - 2711
Alignment:
Q  155 tcattttcatgaaacaa-tcatcacaaaacaaattagtagataaaaacttgagataaatttaatatgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    ||||| ||||||||||| |  ||||||||| ||||| ||||||| ||  | | |||||| ||||  ||||||||||||||||||||||| || | |||||    
T  2812 tcattctcatgaaacaaattctcacaaaacgaattattagataacaagattaaataaatataat--gtttgtaatctttaaaacatcaattatggatttt 2715  T
Q  254 gtct 257  Q
    ||||    
T  2714 gtct 2711  T

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Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 176518 - 176408
Alignment:
Q  156 cattttcatgaaacaatcatcacaaaacaaattagtagataaaaacttgagataaatttaata--tgtttgtaatctttaaaacatcaaataagaatttt 253  Q
    |||| |||||||||| |  |||||||||| |||||||||||| || || | | | | ||| ||  |||||||||||||||||||||| |||||| |||||    
T  176518 cattctcatgaaacatttctcacaaaacatattagtagataacaagttaaaaaacaattattaaatgtttgtaatctttaaaacatctaataaggatttt 176419  T
Q  254 gtcttcaacaa 264  Q
    ||| |||||||    
T  176418 gtcctcaacaa 176408  T

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Target: scaffold0247 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 23597 - 23552
Alignment:
Q  218 atgtttgtaatctttaaaacatcaaataagaattttgtcttcaaca 263  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||    
T  23597 atgtttgtaatctttaaaacatcaaataaggattttttcctcaaca 23552  T

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