View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_3 (Length: 723)
Name: NF13899_low_3
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 181 - 428
Target Start/End: Original strand, 27845219 - 27845465
Alignment:
| Q |
181 |
gtaggaaatagggaggttaaatgcttatgagagctatatagctagggtagggaataagttagtacctgttatatttgtacataagtctaccaagagggac |
280 |
Q |
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| T |
27845219 |
gtaggaaatagggaggttaaatgcttatgagagctatatagctagggtcgggaataagttagtacctgttatatttgtacatatgtctaccaagagggac |
27845318 |
T |
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| Q |
281 |
aaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnnnggaatcaagggatatagctttattt |
380 |
Q |
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| T |
27845319 |
aaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgtttttttttggaatcaagggatatagctttattt |
27845418 |
T |
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| Q |
381 |
taacctttgttaactagccatttgcaaatacttactttgactgtaatt |
428 |
Q |
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| T |
27845419 |
taacctttgttaactagccatttgcaaatacttac-ttgactgtaatt |
27845465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 443 - 591
Target Start/End: Original strand, 27845558 - 27845721
Alignment:
| Q |
443 |
ttttataaggatgaattatactagcattgagtaacaaagtatatatcatatatggctggaagaaccatcctaacaacatttttat--------------- |
527 |
Q |
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| T |
27845558 |
ttttataaggatgaattatactagcattgagtaacaaagtatatatcatatatggctggaagatccatcctaacaacatttttattacaaacgacggata |
27845657 |
T |
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| Q |
528 |
-tagatcagacttaaaacatatcaattttgaaattgaccttatgctaacaacattttcattacac |
591 |
Q |
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| T |
27845658 |
atagatcagactt-aaacatatatattttgaaattgaccttatgctaacaacattttcattacac |
27845721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 605 - 685
Target Start/End: Original strand, 27845706 - 27845786
Alignment:
| Q |
605 |
aacattttcattacacatgctatttatgtgtagcctaattcagtgagattcatttctattttaaccgattaaagaccatgt |
685 |
Q |
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| T |
27845706 |
aacattttcattacacatgctatttatgtgtagcctaattcagtgagattcatttctattttaaccgattaaagaccatgt |
27845786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 27845048 - 27845134
Alignment:
| Q |
21 |
gaaaatgtgtttaaaatttcaatgtagtaacaagaacaaatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
108 |
Q |
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| T |
27845048 |
gaaaatgtgtttaaaatttcaatgtagtaa-aagaacaaatatattagtgtctttcgttgatgtacggtaggatcaatgatgatatgg |
27845134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 279 - 428
Target Start/End: Original strand, 20140192 - 20140343
Alignment:
| Q |
279 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnnngg--aatcaagggatatagcttt |
376 |
Q |
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| T |
20140192 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
20140291 |
T |
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| Q |
377 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
428 |
Q |
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| T |
20140292 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
20140343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 279 - 428
Target Start/End: Complemental strand, 22192677 - 22192526
Alignment:
| Q |
279 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnnngg--aatcaagggatatagcttt |
376 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22192677 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttgttgttttttttttaatcaagggatatagcttt |
22192578 |
T |
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| Q |
377 |
attttaacctttgttaactagccatttgcaaatacttactttgactgtaatt |
428 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22192577 |
attttaaccattgttaactagccatttgcaaatacttactttgactgtaatt |
22192526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 20140068 - 20140149
Alignment:
| Q |
25 |
atgtgtttaaaatttcaatgtagtaacaagaacaaatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
108 |
Q |
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| T |
20140068 |
atgtgtttaaaatttcaatgtagtaac--gaacaaatattttagtgtatgttgttgatgtacggtaggatcaatgatgatatgg |
20140149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 22192801 - 22192720
Alignment:
| Q |
25 |
atgtgtttaaaatttcaatgtagtaacaagaacaaatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
108 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22192801 |
atgtgtttaaaatttcaatgtagtaac--gaacaaatattttagtgtatgttgttgatgtacggtaggatcaatgatgatatgg |
22192720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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