View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_34 (Length: 374)
Name: NF13899_low_34
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 7286322 - 7286488
Alignment:
| Q |
18 |
aatcaaagttgtaattaaatttatcctgttatttaaatattaatatataaagagtaacatatacactaatacataaaaatgaatttatttattttaccag |
117 |
Q |
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| T |
7286322 |
aatcaaagttgtaattaaatttatcctgttatttaaatattaatatataaagagtaacatatacactaatacataaaaatga----atttattttaccag |
7286417 |
T |
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| Q |
118 |
gaagttcgggctctatatacaaaggagggcaagctaaaattaaccaagagtaaatataaaaactggaaaga |
188 |
Q |
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| T |
7286418 |
gaagtccgggtactatatacaaaggagggcaagctaaaattaaccaagagtcaatataaaaactggaaaga |
7286488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 226 - 364
Target Start/End: Original strand, 7286689 - 7286827
Alignment:
| Q |
226 |
ttgaacacctcaatttcggtctctatttgcagaccttatgcacattttcttaaatttttataattcaattttgtacttcttcattcttgattacctttcg |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
7286689 |
ttgaacacctcaatttcggtctctatttgcagaccttatgcacattttcttaaatttttataattcaattttctacttcttcgttcttgattacctttcg |
7286788 |
T |
|
| Q |
326 |
agatatttgtggatatttttgaagtttcaatatattcat |
364 |
Q |
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| T |
7286789 |
agatatttgtggatatttttgaagtttcaatatattcat |
7286827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 325 - 364
Target Start/End: Complemental strand, 8357411 - 8357372
Alignment:
| Q |
325 |
gagatatttgtggatatttttgaagtttcaatatattcat |
364 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| |
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| T |
8357411 |
gagagatttgtggatatttttgcagtttcaatatattcat |
8357372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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