View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_36 (Length: 364)
Name: NF13899_low_36
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 32874758 - 32875091
Alignment:
| Q |
13 |
aagaatataccaggcacacattttactcacaaaaatatcacatggaactaatgacaaaaataattagcatatagacaaaaagaacaacaaaaatcttaga |
112 |
Q |
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| T |
32874758 |
aagaatataccaggcacacattttactcacaaaaatatcacatggaactaatgacaaaaataattagcatatagacaaaaagaacaacaaaaatcttaga |
32874857 |
T |
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| Q |
113 |
gatatttattttttgttcctgttatattggatttgtaaggttatggtttatgctactgcattcaccttatctcttaaagcttggttataattcaaataaa |
212 |
Q |
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| T |
32874858 |
gatatttattttttgttcctgttatattggatttgtaaggttatggtttatgctactgcattcaccttatctcttaaagcttggttataattcaaataaa |
32874957 |
T |
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| Q |
213 |
gcaagagcggcaaagaaattaaacaatggctgcttctacttcaccaaacttctcaacatctttgcacagaaatataaagaaaacatactatcattctttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32874958 |
gcaagagcggcaaagaaattaaacaatggctgcttctacttcaccaaacttctcaacatctttgcacagaaatataaagaaaacatactatcattctttg |
32875057 |
T |
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| Q |
313 |
ctaggaaatagtatatctttgcaaaccaaacttg |
346 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
32875058 |
ctaggaaatagtatatctttgcaaaccaaacttg |
32875091 |
T |
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