View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13899_low_40 (Length: 356)

Name: NF13899_low_40
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13899_low_40
NF13899_low_40
[»] chr7 (6 HSPs)
chr7 (10-217)||(34929048-34929255)
chr7 (137-337)||(42469499-42469699)
chr7 (209-266)||(34928592-34928649)
chr7 (88-126)||(26023747-26023785)
chr7 (307-341)||(34928564-34928598)
chr7 (90-126)||(38123775-38123811)
[»] chr2 (1 HSPs)
chr2 (137-337)||(39169083-39169282)
[»] chr4 (1 HSPs)
chr4 (58-126)||(47179574-47179641)
[»] chr8 (1 HSPs)
chr8 (87-122)||(39648276-39648311)
[»] chr1 (1 HSPs)
chr1 (91-124)||(35680703-35680736)
[»] chr5 (1 HSPs)
chr5 (90-122)||(10860202-10860234)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 34929255 - 34929048
Alignment:
Q  10 attatactcttctcactctccaatnnnnnnnnggtctcattagaaaattttgtgcatggttggcttcaattttgagaagtcaaaattgattttagagatg 109  Q
    ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||    
T  34929255 attatactcttctcactctccaataaaaaaaaggtctcattagaaaattttgtgcatggttggtttcaattttgtgaagtcaaaattaattttagagatg 34929156  T
Q  110 tataattgattttaacaagttgtaggtagaatgtggttctccttggcaagttggtgtgtgatattctcaattatgaagttaaattatgggtcacgatgtt 209  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34929155 tataattgattttaacaagttgtaggtagaatgtggctctccttggcaagttggtgtgtgatattctcaattatgaagttaaattatgggtcacgatgtt 34929056  T
Q  210 taaagata 217  Q
    ||||||||    
T  34929055 taaagata 34929048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 137 - 337
Target Start/End: Original strand, 42469499 - 42469699
Alignment:
Q  137 agaatgtggttctccttggcaagttggtgtgtgatattctcaattatgaagttaaattatgggtcacgatgtttaaagatatttacttagagggaaattt 236  Q
    ||||||||| ||||||||||||||||||||| |||||||| || | ||||| |||||||||||||| |||| |||||||||||||||| | || ||||||    
T  42469499 agaatgtggctctccttggcaagttggtgtgagatattcttaactctgaagataaattatgggtcaagatgcttaaagatatttacttgggggaaaattt 42469598  T
Q  237 ggtcttaaatgttactactccaaagagatgtcctacttaaaactctattgtcagaactattgaactccttagagatgggtttcaattcaaattgagggat 336  Q
    ||||||||||||||||| |  |||| | | ||||||||  ||||||||||||| ||||||||| | ||||| |||||||||||||||||||||| |||||    
T  42469599 ggtcttaaatgttactagtagaaaggggtctcctacttggaactctattgtcaaaactattgagcaccttaaagatgggtttcaattcaaattgggggat 42469698  T
Q  337 g 337  Q
    |    
T  42469699 g 42469699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 34928649 - 34928592
Alignment:
Q  209 ttaaagatatttacttagagggaaatttggtcttaaatgttactactccaaagagatg 266  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34928649 ttaaagatatttacttagagggaaatttggtcttaaatgctactactccaaagagatg 34928592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 26023747 - 26023785
Alignment:
Q  88 gtcaaaattgattttagagatgtataattgattttaaca 126  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  26023747 gtcaaaattaattttagaggtgtataattgattttaaca 26023785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 34928598 - 34928564
Alignment:
Q  307 agagatgggtttcaattcaaattgagggatgatag 341  Q
    ||||||| |||||||||||||||||||||||||||    
T  34928598 agagatgagtttcaattcaaattgagggatgatag 34928564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 38123811 - 38123775
Alignment:
Q  90 caaaattgattttagagatgtataattgattttaaca 126  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  38123811 caaaattgattctagagatgtagaattgattttaaca 38123775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 137 - 337
Target Start/End: Original strand, 39169083 - 39169282
Alignment:
Q  137 agaatgtggttctccttggcaagttggtgtgtgatattctcaattatgaagttaaattatgggtcacgatgtttaaagatatttacttagagggaaattt 236  Q
    ||||||||| ||||||||||||||||||||| |||||||| || | ||||| |||||||||||||| |||| |||||||||||||||| | || ||||||    
T  39169083 agaatgtggctctccttggcaagttggtgtgggatattcttaactttgaagataaattatgggtcaagatgcttaaagatatttactt-ggggaaaattt 39169181  T
Q  237 ggtcttaaatgttactactccaaagagatgtcctacttaaaactctattgtcagaactattgaactccttagagatgggtttcaattcaaattgagggat 336  Q
    ||||||||||||||||| |  |||| | | ||||||||  ||||||||||||| ||||||||| | ||||| |||||||||||||||||||||| |||||    
T  39169182 ggtcttaaatgttactagtagaaaggggtctcctacttggaactctattgtcaaaactattgagcaccttaaagatgggtttcaattcaaattgggggat 39169281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 47179641 - 47179574
Alignment:
Q  58 tttgtgcatggttggcttcaattttgagaagtcaaaattgattttagagatgtataattgattttaaca 126  Q
    |||||| ||| |||| ||||||||  ||| || ||||||||||||||||||||||||||||||||||||    
T  47179641 tttgtgtatgattggtttcaattta-agatgttaaaattgattttagagatgtataattgattttaaca 47179574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 39648311 - 39648276
Alignment:
Q  87 agtcaaaattgattttagagatgtataattgatttt 122  Q
    |||||||||||||| |||||||||||||||||||||    
T  39648311 agtcaaaattgattctagagatgtataattgatttt 39648276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 35680736 - 35680703
Alignment:
Q  91 aaaattgattttagagatgtataattgattttaa 124  Q
    ||||||| ||||||||||||||||||||||||||    
T  35680736 aaaattgtttttagagatgtataattgattttaa 35680703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 10860234 - 10860202
Alignment:
Q  90 caaaattgattttagagatgtataattgatttt 122  Q
    |||||||||||||||||||||| ||||||||||    
T  10860234 caaaattgattttagagatgtagaattgatttt 10860202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University