View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_5 (Length: 576)
Name: NF13899_low_5
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Original strand, 33777399 - 33777964
Alignment:
| Q |
1 |
actgtttccaagcaacagataaatgggaatagctggaaggttctcttacagtcaacatggggaaaaatgtagccttcaattcattgaaaatattgattgg |
100 |
Q |
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| T |
33777399 |
actgtttccaagcaacagataaatgggaatagctggaaggttctcttacagtcaacatggggaaaaatgtagccttcaattcattgaaaatattgattgg |
33777498 |
T |
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| Q |
101 |
agaatcaaaacgcaggatccccacgaccgtataataaatgctgttccaaactgctgaccatgcagtttgatcgaaggcaactttgacaggaactacccac |
200 |
Q |
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| T |
33777499 |
agaatcaaaacgcaggatccccacgaccgtataataaatgctgttccaaactgctgaccatgcagtttgatcgaaggcaactttgacaggaactacccac |
33777598 |
T |
|
| Q |
201 |
catcctttgtaaggaaatagctcctggataaatgagaagccacttaattagcatatcaccataagtcagacaattcaagaactactnnnnnnnggaaaag |
300 |
Q |
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| T |
33777599 |
catcctttgtaaggaaatagctcctggataaatgagaagccacttaattagcatatcaccataagtcagacaattcaagaactactaaaaaaaggaaaag |
33777698 |
T |
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| Q |
301 |
aacattgttattatggtctacctcacaaaactgataatagtaatgagaaagagagccatgcagagcaaaaccaacaagcccggatctgaacatccgtgca |
400 |
Q |
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| T |
33777699 |
aacattgttattatggtctacctcacaaaactgataatagtaatgagaaagagagccatgcagagcaaaaccaacaagcccggatctgaacatccgtgca |
33777798 |
T |
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| Q |
401 |
cgatcaaactcgaaaagaggctttccttcaaagcactgcaataatcatgagagtttaagatgcagtgcatgataaaaaattgtctaatcaactaaccggg |
500 |
Q |
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| T |
33777799 |
cgatcaaactcgaaaagaggctttccttcaaagcactgcaataatcatgatagtttaagatgcagtgcatgataaaagattttctaatcaactaaccggg |
33777898 |
T |
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| Q |
501 |
actgagctttatatgaactgaaatacatagaaagtcacctgtgcgatccagtctcctacagaataa |
566 |
Q |
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| T |
33777899 |
actgagctgtatatgaactaaaatacatagaaagtcacctgagcgatccagtctcctacagaataa |
33777964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 437
Target Start/End: Complemental strand, 38239221 - 38239128
Alignment:
| Q |
344 |
tgagaaagagagccatgcagagcaaaaccaacaagcccggatctgaacatccgtgcacgatcaaactcgaaaagaggctttccttcaaagcact |
437 |
Q |
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| T |
38239221 |
tgagaaagagatccatggagagtaaacccaacaagacctgatctaaatagccgcgctcgatcaaactcaaaaataggctttccttcatagcact |
38239128 |
T |
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