View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_51 (Length: 312)
Name: NF13899_low_51
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 34201408 - 34201126
Alignment:
| Q |
18 |
aggtttaactctttctcaggttcattacctcaagagcttttcaacaagaatcttgatgcaatatttctcaacaacaatgagtttgaaggtgaaataccta |
117 |
Q |
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| T |
34201408 |
aggtttaactctttctcaggttcattacctcaagagcttttcaacaagaatcttgatgcaatatttctcaacaacaatgagtttgaaggtgaaataccta |
34201309 |
T |
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| Q |
118 |
caaacttaggtaattcacctgcttctgtgataaacttagctaataacaaattgagtggaaatattccagctagttttggtttcatgggatcaaagatcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34201308 |
caaacttaggtaattcacctgcttctgtgataaacttagctaataacaaattgagtggaaatattccagctagttttggtttcatgggatcaaagatcaa |
34201209 |
T |
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| Q |
218 |
agagattttgtttctgaataatcagttaactggttgtatacctgaaggagttggactttttactgagatggaagttcttgatg |
300 |
Q |
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| T |
34201208 |
agagattttgtttctgaataatcagttaactggttgtatacctgaaggagttggactttttactgagatggaagttcttgatg |
34201126 |
T |
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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 271
Target Start/End: Original strand, 43030352 - 43030574
Alignment:
| Q |
49 |
aagagcttttcaacaagaatcttgatgcaatatttctcaacaacaatgagtttgaaggtgaaatacctacaaacttaggtaattcacctgcttctgtgat |
148 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||| || ||| ||||| |||||||| || ||||| |
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| T |
43030352 |
aagagcttttcaacaagaaacttgatgcaatatttctcaacaacaatcaatttagtggtgaaatacctcaaagctttggtaactcacctgcatcagtgat |
43030451 |
T |
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| Q |
149 |
aaacttagctaataacaaattgagtggaaatattccagctagttttggtttcatgggatcaaagatcaaagagattttgtttctgaataatcagttaact |
248 |
Q |
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|| |||||||| |||| ||||||||||| ||||| | || |||||||||||| | | || | ||||||||| | ||||| ||||| |||||||| |
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| T |
43030452 |
caatttagctaacaacatgttgagtggaaacattcccacaagctttggtttcatgagtcctaaactaaaagagattctttttcttaataaccagttaaca |
43030551 |
T |
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| Q |
249 |
ggttgtatacctgaaggagttgg |
271 |
Q |
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|||||||||||| |||| ||||| |
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| T |
43030552 |
ggttgtatacctcaaggtgttgg |
43030574 |
T |
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