View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_52 (Length: 310)
Name: NF13899_low_52
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 39075374 - 39075655
Alignment:
| Q |
18 |
acaatgaattttgaaaaaatttcatgtttaatacttccatattaaaggctattgtnnnnnnngaagatacttacgtttaaaggttttactagtctttgca |
117 |
Q |
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| T |
39075374 |
acaatgaattttgaaaaaatttcatgtttaatacttccatattaaaggctattgtaaaaaaagaagatacttacgtctaaaggttttactagtctttgca |
39075473 |
T |
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| Q |
118 |
ttcnnnnnnnctaatgcttaaatatttaatattttactagtctttgcattctaacctgtcatatatcaacaatcaaataattctaacttttatcattata |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39075474 |
ttctttttttctaatgcttaaatatttaatattttactagtctttgcattctaacctgtcatatatcaacaatcaaataattctaacttttatcattata |
39075573 |
T |
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| Q |
218 |
attagctataacttgctactataggtacttctatgttttaccttcattatnnnnnnnncggagtacttcttatgttgtctgt |
299 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
39075574 |
attagctataacttgctactataggtatttctatgttttactttcattataaaaaaaacggagtacttcttatgttgtctgt |
39075655 |
T |
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