View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13899_low_55 (Length: 306)

Name: NF13899_low_55
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13899_low_55
NF13899_low_55
[»] chr7 (3 HSPs)
chr7 (164-288)||(11608735-11608859)
chr7 (8-57)||(11609797-11609846)
chr7 (171-242)||(11739521-11739593)
[»] chr1 (9 HSPs)
chr1 (166-242)||(10751554-10751630)
chr1 (166-242)||(1615986-1616062)
chr1 (166-242)||(31583991-31584067)
chr1 (164-204)||(33439324-33439364)
chr1 (168-219)||(34488605-34488656)
chr1 (173-243)||(35896497-35896568)
chr1 (193-242)||(43281119-43281168)
chr1 (168-243)||(1634895-1634971)
chr1 (166-242)||(14580308-14580384)
[»] scaffold0329 (1 HSPs)
scaffold0329 (164-242)||(4699-4777)
[»] chr3 (5 HSPs)
chr3 (166-243)||(9796570-9796647)
chr3 (164-243)||(4767318-4767396)
chr3 (164-243)||(9828931-9829010)
chr3 (162-243)||(17637129-17637210)
chr3 (181-242)||(31375636-31375697)
[»] chr2 (2 HSPs)
chr2 (164-243)||(18038731-18038811)
chr2 (12-56)||(26879016-26879060)
[»] chr8 (3 HSPs)
chr8 (193-247)||(19711324-19711378)
chr8 (164-211)||(24502376-24502423)
chr8 (164-242)||(18527743-18527821)
[»] chr5 (2 HSPs)
chr5 (164-242)||(37390644-37390722)
chr5 (166-242)||(25770610-25770685)
[»] chr4 (4 HSPs)
chr4 (164-242)||(20245760-20245838)
chr4 (164-242)||(20896752-20896829)
chr4 (166-242)||(11701008-11701084)
chr4 (12-60)||(14711632-14711680)
[»] scaffold0003 (1 HSPs)
scaffold0003 (166-243)||(319030-319107)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 164 - 288
Target Start/End: Complemental strand, 11608859 - 11608735
Alignment:
Q  164 agcatatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaacatgatccatataggatcgacga 263  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  11608859 agcatatctaattgttctttaatacctaattatcatcaaaacatcagagacatcgtacaaaacccattttgtttcaacatgacccatataggattgacga 11608760  T
Q  264 ccttataccatattgagtgtataac 288  Q
    |||||||||||||||  ||||||||    
T  11608759 ccttataccatattggatgtataac 11608735  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 11609846 - 11609797
Alignment:
Q  8 gagcacagaccatgctctgatacaaaatgaagatgagaaaaacacaagat 57  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||||||||    
T  11609846 gagcacataccatgctctgataccaaatgaaggtgagaaaaacacaagat 11609797  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 11739593 - 11739521
Alignment:
Q  171 ctaattgttctttaatacctaattatcatcaaaacattagatacattgtac-aaaacccattttgtttcaaca 242  Q
    ||||||||||||| |||  |  ||||||||||||||||||| ||||||| | ||||||| ||||| |||||||    
T  11739593 ctaattgttctttcatatgttgttatcatcaaaacattagaaacattgttctaaaaccctttttggttcaaca 11739521  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 10751554 - 10751630
Alignment:
Q  166 catatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    |||||| |||||||||||||||| |  ||||||||||||| ||||| |||||||||||| |  ||||||||||||||    
T  10751554 catatccaattgttctttaatactttgttatcatcaaaactttagagacattgtacaaatcaaattttgtttcaaca 10751630  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 1616062 - 1615986
Alignment:
Q  166 catatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    |||||||||||||||||| |||| |  |||| |||||||| | |||| |||||| |||||| ||||||| |||||||    
T  1616062 catatctaattgttcttttatactttgttattatcaaaacttcagatgcattgttcaaaactcattttggttcaaca 1615986  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 31584067 - 31583991
Alignment:
Q  166 catatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    |||||| |||| ||||| ||||| |  ||||||||||||||| |||  |||||||||||||| |||||||| |||||    
T  31584067 catatccaattattcttcaatactttgttatcatcaaaacatcagaggcattgtacaaaaccaattttgttccaaca 31583991  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 33439324 - 33439364
Alignment:
Q  164 agcatatctaattgttctttaatacctaattatcatcaaaa 204  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  33439324 agcatatctaattgttctttaataccttgttatcatcaaaa 33439364  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 34488605 - 34488656
Alignment:
Q  168 tatctaattgttctttaatacctaattatcatcaaaacattagatacattgt 219  Q
    |||| ||||||||||| |||||| ||||||||||||||  ||||||||||||    
T  34488605 tatcaaattgttctttcataccttattatcatcaaaactctagatacattgt 34488656  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 35896497 - 35896568
Alignment:
Q  173 aattgttcttt-aatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaacat 243  Q
    ||||||||||| ||||| |  ||||||||||||| | ||||||||| ||||||||| |||||| ||||||||    
T  35896497 aattgttcttttaatactttcttatcatcaaaacttcagatacattatacaaaacctattttggttcaacat 35896568  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 43281168 - 43281119
Alignment:
Q  193 ttatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    ||||||||||||| ||||| ||||||| ||||| | ||||||||||||||    
T  43281168 ttatcatcaaaactttagagacattgtgcaaaatctattttgtttcaaca 43281119  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 1634971 - 1634895
Alignment:
Q  168 tatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaa-cccattttgtttcaacat 243  Q
    |||| ||||||||  | |||||| ||||||||||||||  | || ||||||||||||| ||||||||| ||||||||    
T  1634971 tatccaattgttcacttataccttattatcatcaaaactctggagacattgtacaaaaccccattttgattcaacat 1634895  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 14580384 - 14580308
Alignment:
Q  166 catatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    ||||||||||||||||||||||| |  ||||||||||||  ||| |  ||||| ||||| || |||||||| |||||    
T  14580384 catatctaattgttctttaatactttgttatcatcaaaattttaaaggcattggacaaatccaattttgttccaaca 14580308  T

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Target: scaffold0329 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 4699 - 4777
Alignment:
Q  164 agcatatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    |||||||| ||||||| |||| |||||   |||||||||||| |||||   ||||||||||||||||||||||||||||    
T  4699 agcatatccaattgttttttactaccttgatatcatcaaaactttagaggtattgtacaaaacccattttgtttcaaca 4777  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 9796570 - 9796647
Alignment:
Q  166 catatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaacat 243  Q
    |||||| |||||||||||||||| | |||||||||||||| | ||| | ||||||||||| | |||||||| ||||||    
T  9796570 catatccaattgttctttaatactttattatcatcaaaacttcagagaaattgtacaaaatcaattttgttccaacat 9796647  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 4767396 - 4767318
Alignment:
Q  164 agcatatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaacat 243  Q
    ||||||||||||| ||||||||||| |  ||||||||||||| |||||   ||||||| ||||| |||||||||||||||    
T  4767396 agcatatctaattattctttaatactttgttatcatcaaaaccttagaggaattgtac-aaaccaattttgtttcaacat 4767318  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 9829010 - 9828931
Alignment:
Q  164 agcatatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaacat 243  Q
    |||||||||||||||||||| |||| |  ||||||||||||| ||||  ||||||| |||||| ||||||| || |||||    
T  9829010 agcatatctaattgttcttttatacattgttatcatcaaaactttagggacattgttcaaaactcattttggttaaacat 9828931  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 17637210 - 17637129
Alignment:
Q  162 tcagcatatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaacat 243  Q
    |||||||||| |||||||||||| ||  |  |||||||||||||| ||||   ||||||||||||| |||||||| ||||||    
T  17637210 tcagcatatccaattgttctttactaatttgttatcatcaaaacactagaggaattgtacaaaaccaattttgttccaacat 17637129  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 31375636 - 31375697
Alignment:
Q  181 tttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    ||||||||||  ||||||||||||| | |||  ||| ||||||||||||||||| |||||||    
T  31375636 tttaataccttgttatcatcaaaacttcagaggcatggtacaaaacccattttgattcaaca 31375697  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 18038731 - 18038811
Alignment:
Q  164 agcatatctaattgttcttt-aatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaacat 243  Q
    |||||||| ||||||||||| |||||||  ||||||| ||||| | |||  |||||||||||||| |||||||||||||||    
T  18038731 agcatatccaattgttcttttaataccttgttatcattaaaacctaagaggcattgtacaaaacctattttgtttcaacat 18038811  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 26879016 - 26879060
Alignment:
Q  12 acagaccatgctctgatacaaaatgaagatgagaaaaacacaaga 56  Q
    ||||| || |||||||||| || ||||||||||||||||||||||    
T  26879016 acagagcaagctctgataccaattgaagatgagaaaaacacaaga 26879060  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 19711378 - 19711324
Alignment:
Q  193 ttatcatcaaaacattagatacattgtacaaaacccattttgtttcaacatgatc 247  Q
    |||||| | |||| ||||| ||||||||||||| |||||||||||||||||||||    
T  19711378 ttatcagcgaaactttagagacattgtacaaaatccattttgtttcaacatgatc 19711324  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 24502423 - 24502376
Alignment:
Q  164 agcatatctaattgttctttaatacctaattatcatcaaaacattaga 211  Q
    |||||||| |||||||||||||||| | |||||||||||||| |||||    
T  24502423 agcatatccaattgttctttaatactttattatcatcaaaactttaga 24502376  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 18527821 - 18527743
Alignment:
Q  164 agcatatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    |||||||||||||||||||||||| ||  |||| |||||||| |||||   ||||||||||  | |||||||| |||||    
T  18527821 agcatatctaattgttctttaatatcttgttataatcaaaactttagaggtattgtacaaatgcaattttgttccaaca 18527743  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 37390644 - 37390722
Alignment:
Q  164 agcatatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    |||||| | ||||||||| |||||||| || ||||||||||| ||| | ||||| |||||| |||||||||| ||||||    
T  37390644 agcataaccaattgttctgtaataccttatcatcatcaaaactttaaagacattatacaaagcccattttgtgtcaaca 37390722  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 25770610 - 25770685
Alignment:
Q  166 catatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    |||||||||||||||||| || | | |||||||||||||| | ||| ||| ||| |||||||||||||  |||||||    
T  25770610 catatctaattgttcttttatgctttattatcatcaaaacttcagagaca-tgtgcaaaacccatttttgttcaaca 25770685  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 20245760 - 20245838
Alignment:
Q  164 agcatatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    |||||||| |||||||||| ||||| |  ||||||||||||||| |||  ||||||||||| || |||||||| |||||    
T  20245760 agcatatccaattgttcttcaatactttgttatcatcaaaacatcagaggcattgtacaaatccaattttgttccaaca 20245838  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 20896829 - 20896752
Alignment:
Q  164 agcatatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    |||||||| |||||||||||||||| | |||||||||||||  |||||   ||||||| ||||| ||||||||||||||    
T  20896829 agcatatccaattgttctttaatactttattatcatcaaaatcttagaggaattgtac-aaaccaattttgtttcaaca 20896752  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 11701008 - 11701084
Alignment:
Q  166 catatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaaca 242  Q
    ||||||||||| |||||| |||| |  |||| |||||||||| | | ||||| | |||||||||||||| |||||||    
T  11701008 catatctaattattctttcatactttgttattatcaaaacatcataaacatttttcaaaacccattttgattcaaca 11701084  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 14711680 - 14711632
Alignment:
Q  12 acagaccatgctctgatacaaaatgaagatgagaaaaacacaagatggg 60  Q
    ||||| || |||||||||| || ||||| ||||||||||||||||||||    
T  14711680 acagagcaagctctgataccaattgaaggtgagaaaaacacaagatggg 14711632  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 319107 - 319030
Alignment:
Q  166 catatctaattgttctttaatacctaattatcatcaaaacattagatacattgtacaaaacccattttgtttcaacat 243  Q
    |||||||||||||| || ||||| |  ||||||||||||| ||| |  ||||||||||||||||||||  ||||||||    
T  319107 catatctaattgtttttcaatactttgttatcatcaaaactttaaaggcattgtacaaaacccatttttattcaacat 319030  T

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