View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_6 (Length: 573)
Name: NF13899_low_6
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 164 - 521
Target Start/End: Complemental strand, 3831857 - 3831489
Alignment:
| Q |
164 |
ggactatttcaaaatctcattggaaactaagaataaaataagtttaaataacctttcttttctacaagtcaaacttagtgttgcccacattgacatgtat |
263 |
Q |
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| T |
3831857 |
ggactatttcaaaatctcattggaaactaagaataaaataagtttaaataccatttcttttctacaagtcaaacttagtgttgcccacattgacatgtat |
3831758 |
T |
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| Q |
264 |
acatacatagttaattcgaattccaggatcctaagcaagggaagaaaaacaaggaaaaagtgaaagaaagagtgaatcaaataccccattatgaaaacaa |
363 |
Q |
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| T |
3831757 |
acatacatagttaattcgaattccaggatcctaagcaagggaagaaaaacaaggaaaaagtgaaagaaagagtgaatcaaataccccattatgaaaacaa |
3831658 |
T |
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| Q |
364 |
ttagcatattggaccatgcaaactaagtgaaagaagggaccacaattagcattggcatctcatagaaatagactcgattatatatattggaccatgctca |
463 |
Q |
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| T |
3831657 |
ttagcatattggaccatgcaaactaagtgaaagaagggaccacaattagcattggcatctcatagaaagagactcgattatatatattggaccatgctca |
3831558 |
T |
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| Q |
464 |
-----------cacacaacacttttgcacgtttttattttaaattaaaaaacgggaagtttctattgtt |
521 |
Q |
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| T |
3831557 |
caagaagcagccacacaacacttttgcacgtttttattttaaattaaaaaacgggaagtttctattgtt |
3831489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 3832020 - 3831930
Alignment:
| Q |
1 |
ttattctatgttaatttatgaatattagcaaatgtcaacttttcctaaacttttcatattgtatagtacaggataataaaataaaaacgta |
91 |
Q |
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| T |
3832020 |
ttatgctatgttaatttatgaatatttgcaaatgtcaacttttcctaaacttttcatattgtatagtacaggataataaaataaaaacgta |
3831930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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