View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_62 (Length: 263)
Name: NF13899_low_62
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 33891289 - 33891519
Alignment:
| Q |
14 |
tgagaagaagaggtgaatgtgttcagcacccttgacaattgccatatagaagagttgcttgacaatgaagtaatggaaccaagttactttgatgttgacg |
113 |
Q |
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| T |
33891289 |
tgagaagaagaggtgaatgtgttcagcacccttgacaattgccatatagaagagttgcttgacaatgaagtaatggaaccaagttactttgatgttgacg |
33891388 |
T |
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| Q |
114 |
aaaccacaacgcaaccatgattaaactgcatcaactgcatttgacggtgattctccgctatatcagtgattgcaatgcgactgcaacactctgagtgtag |
213 |
Q |
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| T |
33891389 |
aaaccacaacgcaaccatgattaaattgcatcaactgcatttgacggtgattctccgctatatcagtgattgcaatgcgactgcaacactctgagtgtag |
33891488 |
T |
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| Q |
214 |
gaaagtaatttgtgcaagcagtaggaaagcc |
244 |
Q |
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| T |
33891489 |
gaaagtaatttgtgcaagcagtaggaaagcc |
33891519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 33911688 - 33911733
Alignment:
| Q |
57 |
atatagaagagttgcttgacaatgaagtaatggaaccaagttactt |
102 |
Q |
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| T |
33911688 |
atatagaagagttgcttgacaaagaagtaatggaaccaagtcactt |
33911733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 33886603 - 33886637
Alignment:
| Q |
64 |
agagttgcttgacaatgaagtaatggaaccaagtt |
98 |
Q |
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| T |
33886603 |
agagttgcttgacaatgaagtaatggaacaaagtt |
33886637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 33894845 - 33894811
Alignment:
| Q |
64 |
agagttgcttgacaatgaagtaatggaaccaagtt |
98 |
Q |
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| T |
33894845 |
agagttgcttgacaatgaagtaatggaacaaagtt |
33894811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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