View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_63 (Length: 252)
Name: NF13899_low_63
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_63 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 25895518 - 25895760
Alignment:
| Q |
11 |
acatcatcacctgcccctcctataacttcccctacagatcagaatttcccatctcccaactctcaatcaacccatcatctgtcctcttcta-aaatccac |
109 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25895518 |
acatcatcagctgcccctcctataacttcccctacagatcagaatttcccatctcccaactctcaatcaacccatcatctgtcctcttctacaaatccac |
25895617 |
T |
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| Q |
110 |
ttccttccacaacttcctcaataaatcaacccacatctacacctatttccttttctgccacccacttaacttcacccaatgcatccctgccccttactac |
209 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25895618 |
ttccttccacaacttcctctataaatcaacccacatctacacatatttccttttctgccacccacttaacttcacccaatgcatccctgccccttactac |
25895717 |
T |
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| Q |
210 |
ttctgctccccccacacctccaccaccagttaatactcatcct |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25895718 |
ttctgctccccccacacctccaccaccagttaatactcatcct |
25895760 |
T |
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