View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13899_low_68 (Length: 239)
Name: NF13899_low_68
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_68 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 41378298 - 41378079
Alignment:
| Q |
1 |
accattattgtaacaaaagataaggacaagacaagccaagtttaacttatttagcaaagaaaatccaaaactgtcaagactaaatatcaaattctatatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
41378298 |
accattattgtaacaaaagataaggacaagacaagccaagtttaacttatttagcaaagaaaatccaaaactgtcaaaactaaatatcaaactctatatc |
41378199 |
T |
|
| Q |
101 |
gagtttagcaaaccccacaacacattaacaaatacaaagattagcaatttaatgattaggaatgttaaaacatcc------cactcatttaatttagaga |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |
|
|
| T |
41378198 |
gagtttagcaaaccccacaacacattaacaaatacaaagattagcaatttaatgattaggaatgttaaaacattcaagaggaactcatttaattttgaga |
41378099 |
T |
|
| Q |
195 |
aatgctaatttgtgtcataa |
214 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
41378098 |
aatgctaacttatgtcataa |
41378079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 5683579 - 5683541
Alignment:
| Q |
181 |
atttaatttagagaaatgctaatttgtgtcataaaaaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
5683579 |
atttaatttagagaaatgctaatttgtgtctttaaaaca |
5683541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University