View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_7 (Length: 571)
Name: NF13899_low_7
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 2 - 554
Target Start/End: Complemental strand, 43062224 - 43061672
Alignment:
| Q |
2 |
aaaataaaataaaatcaaaacgaacaagaatcacaggatcaagaaacaggagcaccaggtggagaaaacgaaagtccttcttcttcatcaagaaacagat |
101 |
Q |
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| T |
43062224 |
aaaataaaataaaataaaaacgaacaagaatcacaggatcaagaaacaggagcaccaggtggagaaaacgaatgtccttcttcttcatcaagaaacagat |
43062125 |
T |
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| Q |
102 |
cactggtgtttctaaaagcagcatgaagaagaataacaacaacaccaactgcaacggcgataagaatattgagaatcgcaccagtaagcaaaagcaatcc |
201 |
Q |
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| T |
43062124 |
cactggtgtttctaaaagcagcatgaagaagaataactacaacaccaactgcaacggcgataagaatattgagaatcgcaccagtaagcaaaagcaatcc |
43062025 |
T |
|
| Q |
202 |
aacggtgagaatcaacataagcacaagaataacacgatcactgatgagtcgtccaaagataacaataggttcatcgcgaagaaagtagagaaacaaccac |
301 |
Q |
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| T |
43062024 |
aacggtgagaatcaacataagcacaagaataacacgatcactgatgagtcgtccaaagataacaataggttcatcgcgaagaaagtagagaaacaaccac |
43061925 |
T |
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| Q |
302 |
gcagctatgagaacgacgaagacgatgagtgagattggatgccagagaagactgaggaagaggatgatgagaaggatgatggcgtagttcatctggaaga |
401 |
Q |
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| T |
43061924 |
gcagctatgagaacgacgaagacgatgagtgagattggatgccagagaagactgaggaagaggatgatgagaaggatgatggcgtagttcatctggaaga |
43061825 |
T |
|
| Q |
402 |
aagagatgttggttttgatacgggagatagcgtcgtggaagttggatgggaggttgaaggaacggaggttgacgaggagtttccatggacggcgagttcc |
501 |
Q |
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| T |
43061824 |
aagagatgttggttttgatacgggagatagcgtcgtggaagttggatgggaggttgaaggaacggaggttgacgaggagtttccatggacggcgagtacc |
43061725 |
T |
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| Q |
502 |
gaggccggatttgaggcggtctttggcgcgtgtgatgaattcgaggtttgttg |
554 |
Q |
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| T |
43061724 |
gaggccggatttgaggcggtctttggcgcgtgtgatgaattcgaggtttgttg |
43061672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 201 - 503
Target Start/End: Complemental strand, 43059709 - 43059407
Alignment:
| Q |
201 |
caacggtgagaatcaacataagcacaagaataacacgatcactgatgagtcgtccaaagataacaataggttcatcgcgaagaaagtagagaaacaacca |
300 |
Q |
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||||||||||||||||||| | | || || |||||||||||||||||||| |||||| | | || |||||||| ||||| || ||||| || | ||| |
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| T |
43059709 |
caacggtgagaatcaacatcggaaaaacaacaacacgatcactgatgagtcttccaaacacagtaaacggttcatcacgaaggaaatagaggaagagcca |
43059610 |
T |
|
| Q |
301 |
cgcagctatgagaacgacgaagacgatgagtgagattggatgccagagaagactgaggaagaggatgatgagaaggatgatggcgtagttcatctggaag |
400 |
Q |
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| T |
43059609 |
ggaagccatgagttcgaggaagacgatgagcgaagttggatgaaatagaagactgaggaagaggatgatgacgaggatgatagtgtagttcatctcgaag |
43059510 |
T |
|
| Q |
401 |
aaagagatgttggttttgata-cgggagatagcgtcgtggaagttggatgggaggttgaaggaacggaggttgacgaggagtttccatggacggcgagtt |
499 |
Q |
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| T |
43059509 |
aagcagatgttgatttt-ataccgagagattgcatcgttgaaattgcgtgggaggttgaatgattgaacgttgaagaaaagtttccatggacggcgagtt |
43059411 |
T |
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| Q |
500 |
ccga |
503 |
Q |
| |
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|||| |
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| T |
43059410 |
ccga |
43059407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 390
Target Start/End: Complemental strand, 31283098 - 31283022
Alignment:
| Q |
314 |
acgacgaagacgatgagtgagattggatgccagagaagactgaggaagaggatgatgagaaggatgatggcgtagtt |
390 |
Q |
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|||| |||||||||||| |||| || || |||| || |||||||||||||||| ||| | ||||||||||||||| |
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| T |
31283098 |
acgaggaagacgatgagggagagagggtggtagaggaggctgaggaagaggatgaagaggatgatgatggcgtagtt |
31283022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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