View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_71 (Length: 232)
Name: NF13899_low_71
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 30099045 - 30099251
Alignment:
| Q |
18 |
tgaacttgtaggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaa |
117 |
Q |
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| T |
30099045 |
tgaacttgtaggtaactatgttaatggagcttcttattttggttatgccaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaa |
30099144 |
T |
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| Q |
118 |
gtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttg |
217 |
Q |
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| T |
30099145 |
gtcatttgggaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttg |
30099244 |
T |
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| Q |
218 |
atgatgt |
224 |
Q |
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||||||| |
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| T |
30099245 |
atgatgt |
30099251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 27 - 220
Target Start/End: Complemental strand, 30091859 - 30091666
Alignment:
| Q |
27 |
aggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgg |
126 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
30091859 |
aggtaactatgtcaatggaacttcttattttggttatgctaaaggagtagcaagaggcattgcaccaagagctaggcttgctatgtacaaagtcatttgg |
30091760 |
T |
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| Q |
127 |
gaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatg |
220 |
Q |
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| T |
30091759 |
gaagagggtcttttggcttctgatgttttagctggaatggaccaagctattgctgatggtgttgatgtgatttcaatttctatgggatttgatg |
30091666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 27 - 220
Target Start/End: Complemental strand, 30087879 - 30087686
Alignment:
| Q |
27 |
aggtaactatgttaatggagcttcttattttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgg |
126 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30087879 |
aggtaactatgtcaacggagcttcttattttggctatgctaaaggagtagcaagaggcattgcaccaaaagctaagattgctatgtacaaagtcatttgg |
30087780 |
T |
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| Q |
127 |
gaagagggtcgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatg |
220 |
Q |
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| T |
30087779 |
gaagaggatgttatggcttctgatgttttagctggaatggaccaagcaattattgatggtgttgacgtgatttcaatttctattggaattgatg |
30087686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 35171551 - 35171429
Alignment:
| Q |
55 |
tttggttatgctaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcctctgatgttt |
154 |
Q |
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||||||||||| ||||| |||| ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| || |||||| | || ||||||||| |
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| T |
35171551 |
tttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagcttctgatgttc |
35171452 |
T |
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| Q |
155 |
tagctggcatggaccaagctatt |
177 |
Q |
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| || || ||||| ||||||||| |
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| T |
35171451 |
ttgcaggaatggatcaagctatt |
35171429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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